Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1446 ATGCCGGAATCTGAAAGTGGAACGCCGGTGCCTTCGGCGCCGGCGACGCCGGGGACGCCGGGAGGGCCTCTGTTTTCCGGTCTACGGGTGGATTCGTTGTCGTACGATCGGAAGTCAATGCCGCGGTGCAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCATCCTCACACGTGCTTCACTGACTTCCCTGCACCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCCTTATATTTGCTGCAACGGCAGGGCCCATTGTGAACCAAAAGTACAACGGCGTCGAGACTCTCATCGGAAACGCCGCATGCGCCGGCCTGGCCGTGATGATTGTAATTCTGTCGACCGGACACATCTCCGGCGCCCACCTGAACCCATCGCTCACCATTGCCTTCGCCGCCCTCCGCCACTTCCCTTGGGTCCAAGTCCCCGCCTACATCGCCGCCCAAGTCTCCGCCTCCATCTGCGCCTCCTTCGCTCTCAAAGGTGTTTTTCACCCTTTCATGTCCGGCGGCGTCACCGTCCCCTCCGTCAGCACCGGCCAGGCTTTCGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGACACTCGCGCGGTCGGAGAGTTGGCAGGAATTGCAGTTGGAGCTACAGTGCTGCTCAACATTCTTGTCGCAGGGCCCTCAACCGGTGCTTCAATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAACTACAGAGAATTGTGGCTATACCTGGTGGCGCCGACGCTGGGGGCGATCGTGGGCGCCGGAACTTACACAATGGTGAAGCTGAGAGACGACGAAGTGGATGCTCCGGCCCAGGTGAGGAGCTTCCGCCGCTGA 897 59.98 MPESESGTPVPSAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGHPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILVAGPSTGASMNPVRTLGPAVAAGNYRELWLYLVAPTLGAIVGAGTYTMVKLRDDEVDAPAQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32924441 32929828 + Maker00029281 Lcy12g1446 649509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1446 298 PANTHER AQUAPORIN NIP2-1 68 284 IPR034294 -
Lcy12g1446 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Lcy12g1446 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Lcy12g1446 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1446 298 FunFam Aquaporin NIP2-1 60 292 - -
Lcy12g1446 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Lcy12g1446 298 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1446 Lcy-Chr12:32924441 Lcy1g0246 Lcy-Chr1:2212111 3.89E-68 dispersed
Lcy12g1446 Lcy-Chr12:32924441 Lcy12g1447 Lcy-Chr12:32957403 1.33E-165 tandem
Lcy11g1511 Lcy-Chr11:38998709 Lcy12g1446 Lcy-Chr12:32924441 9.35E-40 transposed
Lcy12g0531 Lcy-Chr12:6490586 Lcy12g1446 Lcy-Chr12:32924441 1.11E-116 transposed
Lcy6g0718 Lcy-Chr6:6980340 Lcy12g1446 Lcy-Chr12:32924441 5.25E-61 transposed
Lcy6g0719 Lcy-Chr6:6982510 Lcy12g1446 Lcy-Chr12:32924441 3.91E-15 transposed
Lcy10g0489 Lcy-Chr10:12294132 Lcy12g1446 Lcy-Chr12:32924441 7.66E-65 wgd
Lcy10g0480 Lcy-Chr10:11678482 Lcy12g1446 Lcy-Chr12:32924441 1.52E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1446 K09874 - csv:101212651 558.91