Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1447 ATGTCAGAGTCAGAAAGTGGGATATTGGTTTCATCGAGGGCGGAGTCCCAATGTTCAAGCCTCCGAGTGGATTCATTGTCGTACGATCAAAAACAAATGTCCCAATGCGAGTGCTTGCCTGTTAATGCCCCAAAGAGGAGCCAGGGTCACATGTGCTTCACTCACTTCCCTACTCTTGGTGTCTCTCTCACTAGAAAGCTTGGAGCAGAATTCGTGGGCACATTCATCCTCATATTTGCCGCAACAGCCGCACCCATCATCAACCAAAAGTACAACGCCGCCCTGTCCCTGATCGGAAACGCCGCATGCTCCGGCCTAGCGGTGATGATCGTAATTATGTCAACCGGTCACATCTCCGGCGCCCACCTGAACCCGTCCCTCACCATCGCCTTCGCCGCCCTCCGCCACTTCCCATGGGTCCAAGTGCCGGCCTACATCGCCGCCCAAGTCTCCGCCTCCATCTGCGCCTCCTACGCTCTCAAAGGAGTATTTCACCCTTTCATGTCCGGCGGCGTCACCGTCCCCTCCGTCGGCACCGGCCAGGCTTTTGCTCTCGAATTCCTCATCACTTTCAATCTCTTGTTTGTCGTCACTGCTGTCGCTACTGATACTCGCGCTGTTGGAGAGTTAGCCGGAATTGCAGTCGGAGCTACAGTGCTGCTCAACATTCTTATCGCAGGGCCATCCACCGGTGGTTCGATGAATCCAGTGCGGACTCTGGGCCCCGCCGTGGCCGCCGGAAATTACAGAGAATTGTGGGTGTACATGGTGGCTCCTACACTTGGGGCAATTGTCGGCGCCGGAACCTACGCCGCCGTTAAGCTCAAAGATGATAAACTGGAGGTTCCGTCGCCGGTGAGGAGCTTCCGTCGATGA 876 55.94 MSESESGILVSSRAESQCSSLRVDSLSYDQKQMSQCECLPVNAPKRSQGHMCFTHFPTLGVSLTRKLGAEFVGTFILIFAATAAPIINQKYNAALSLIGNAACSGLAVMIVIMSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASYALKGVFHPFMSGGVTVPSVGTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVLLNILIAGPSTGGSMNPVRTLGPAVAAGNYRELWVYMVAPTLGAIVGAGTYAAVKLKDDKLEVPSPVRSFRR 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32957403 32960962 + Maker00029261 Lcy12g1447 649510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1447 291 Gene3D Glycerol uptake facilitator protein. 31 282 IPR023271 -
Lcy12g1447 291 PRINTS Major intrinsic protein family signature 253 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 PRINTS Major intrinsic protein family signature 65 84 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 PRINTS Major intrinsic protein family signature 141 160 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 PRINTS Major intrinsic protein family signature 104 128 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 FunFam Aquaporin NIP2-1 53 284 - -
Lcy12g1447 291 SUPERFAMILY Aquaporin-like 61 276 IPR023271 -
Lcy12g1447 291 PANTHER AQUAPORIN NIP2-1 50 278 IPR034294 -
Lcy12g1447 291 ProSitePatterns MIP family signature. 122 130 IPR022357 -
Lcy12g1447 291 Pfam Major intrinsic protein 62 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1447 291 CDD MIP 65 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0489 Lcy-Chr10:12294132 Lcy12g1447 Lcy-Chr12:32957403 1.44E-69 dispersed
Lcy12g0531 Lcy-Chr12:6490586 Lcy12g1447 Lcy-Chr12:32957403 4.16E-110 dispersed
Lcy12g1447 Lcy-Chr12:32957403 Lcy1g0246 Lcy-Chr1:2212111 4.93E-67 dispersed
Lcy12g1446 Lcy-Chr12:32924441 Lcy12g1447 Lcy-Chr12:32957403 1.33E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1447 K09874 - csv:101212651 460.299