Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1449 ATGGGTTTGCTCCGATTCTTAAGAATCAAGAGGAAATCGAAAGTTGCTGATAAGAAAACCGTTCTTGATGTGAAAATTCAGGAGGGTTTAGGTTCTGGGAAGTTTCGGTGGAGTGAGATCGAGGCCTTCACTAAGAATTTCTCCACCGTCGTCGGCTCCGGCGGCTTCAGTAACGTTTATCTTGCTCGGACGGCGAAGGGGATGGCGGCGGTTAAGATTTTGGGCGCTAGTGAGCGGCTCAACCGGATGTTCCGGCAGGAGTTGGACATTCTTCTGCAACTCCGCCACCGGAATATTGTTAGCTTCATTGGCTATTGCGATGAACGAGATGAAGGAGCTTTAGTATTCGAATATGTCCCAAATGGGAACTTGCAAGAGAAGCTCCACGGCCGGCCGGCGACGGCGAAGACGGCGGCGGTTCTTCCATGGAAAATCCGGCTAACCATAGCCTTTCAATTGGCCCAAGCAATCGAATACCTCCATGAGAAATGCAGTCTTCAAATCGTCCATGGCGATGTAAAATCATCAAACATTTTACTGGACGAACGATTCAATTGCAAACTGTGCGATTTCGGGTCCGCAAAAATGGGCTTCTCGTCGGCGGTGGCGAATCCGCCGTCGAGTCCGTTCAGAGCGAAGCAATTGATGGTGGGATCTCCAGGTTACACAGATCCCCAATATTTACGAACCGGAATCGCCTCAAAGAAGAACGACATTTACAGTTTCGGCGTGGTTCTTTTAGAGCTCATCACCGGAAAAGAGGCCTTCTGCTCGGAAAAGGGCCAGCTTCTGACTTCGATTGTACCTCCGGCAATTCGCGAAGGCGGAGGAATTAAACCGTGGGAGGTGGCGGAGCTGGTGGATCCTCGGCTGCAGGGGGATTTCGAGGGCGGAGAAGCGGAAGCATTGCTGTCAATCGCGGCGGCGTGCACATCGCAGGCACCGGCGCCGAGGCCGGCGATCGGTGGGGTGCTGCAGATGATGAGGGAGAGGATGGGGAATGTTGGGGAGGGGGAGACAGGTGGCAGTAAGTTATTGGATGTGGGGAGATGGTAA 1056 52.84 MGLLRFLRIKRKSKVADKKTVLDVKIQEGLGSGKFRWSEIEAFTKNFSTVVGSGGFSNVYLARTAKGMAAVKILGASERLNRMFRQELDILLQLRHRNIVSFIGYCDERDEGALVFEYVPNGNLQEKLHGRPATAKTAAVLPWKIRLTIAFQLAQAIEYLHEKCSLQIVHGDVKSSNILLDERFNCKLCDFGSAKMGFSSAVANPPSSPFRAKQLMVGSPGYTDPQYLRTGIASKKNDIYSFGVVLLELITGKEAFCSEKGQLLTSIVPPAIREGGGIKPWEVAELVDPRLQGDFEGGEAEALLSIAAACTSQAPAPRPAIGGVLQMMRERMGNVGEGETGGSKLLDVGRW 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33002333 33003972 - Maker00029227 Lcy12g1449 649512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1449 351 SMART serkin_6 45 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1449 351 Pfam Protein kinase domain 49 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1449 351 PANTHER OS01G0253100 PROTEIN 28 330 - GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy12g1449 351 CDD STKc_IRAK 51 328 - -
Lcy12g1449 351 ProSiteProfiles Protein kinase domain profile. 45 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1449 351 ProSitePatterns Protein kinases ATP-binding region signature. 51 72 IPR017441 GO:0005524(InterPro)
Lcy12g1449 351 Gene3D Transferase(Phosphotransferase) domain 1 119 338 - -
Lcy12g1449 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1449 351 SUPERFAMILY Protein kinase-like (PK-like) 34 328 IPR011009 -
Lcy12g1449 351 Gene3D Phosphorylase Kinase; domain 1 8 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1449 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1449 Lcy-Chr12:33002333 Lcy13g0875 Lcy-Chr13:15154924 1.11E-53 dispersed
Lcy12g1449 Lcy-Chr12:33002333 Lcy2g2014 Lcy-Chr2:38132784 1.28E-43 wgd
Lcy12g1449 Lcy-Chr12:33002333 Lcy6g1277 Lcy-Chr6:16048770 1.53E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g299 . . . . . . . . . . Cma02g00970 Cma15g01347 Car02g00716 Car15g01215 . . Cpe05g00747 . . . . . . . . . . . . . . . . . . . Csa05g00131 Chy09g01363 . . . . . . . . . . Cmo02g00976 Cmo15g01410 . . . . . . Bhi12g00045 . . . . . Lcy12g1449 Cla01g00115 . . . . . . Lsi09g00103 . . Cme09g01910
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65525 None None None None Lcy PK