Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1474 ATGAGCTCTCAGAATTCCGCTGAAGACTGTCTCGGATGGGCCGCAAGGGATTCTTCTGGCTTTCTATCTCCTTACAAATTCAGTCGTAGGGTTCTTGGAGATGATGATGTTTCAATTACAATAACACATTGCGGAATTTGTTATGCGGATGTAGCATGGACAAGAAATAAATTAGGAGATTCAAAGTATCCGTTGGTGCCTGGTCATGAGATTGCAGGAATTGTGAAAAATGTTGGTTCAAATGTTCACCGATTCAAAGTTGGAGATCATGTTGGGGTAGGTACTTATGTGAATACTTGTAGACAGTGCGAGTATTGTGAAAATGACCTAGAAGCTGTTTGTACGAGTGGATCCACTTATACTTTTAATTCAATTGATGTTGATGGTACAATTACGAAGGGAGGATATTCCAACTACATAGTTACTTTCAAGCAACCCTTGAAATTGGTTGAGAAGTTTTCCCAATTATTTTCAAGCAAACTTTCTGAGATACGTACTGTGAATTTCAGATACTGCTACAGAATACCTGACAATTATCCATTAGCTTCAGCTGCTCCTTTGCTCTGTGCTGGAATTACTGTTTATGCTCCAATGATTCGACATAAGATGAATCAACCTGGTAAATCTCTTGGAGTGATTGGGCTTGGTGGTCTCGGCCACTTGGCAGTGAAGTTTGGGAAGGCTTTTGGACTGAATGTGACGGTTTTTAGCACTAGCATATCCAAGAAAGAAGAAGCCCTGAGCCTTCTTGGAGCAGACAGATTTGTTATCTCATCTGACAAGGAGCAAATGGAGGCCTTGTCTAAGTCCCTCGACTTTATTATTGATTCCGCATCTGGTGATCACCCATTTGATCCATACATGTCTACATTGAAGATTGGTGGCGTTATGGTCCTGGTGGGGTTTCCTTCTGAAGTCAAGTTTAGTCCTGCAAGCCTGAATATGGGTTTGAGAACCGTTTCTGGTAGCTTAACTGGTGGCACTAAAGTGACCCAAGAAATGATTGATTTCTGTGCTGCTCATGGAATCTATCCAAACATAGAAGTGATTCCAATTCAATACTCTAATGAAGCTATCGAAAGGGTAATAAAGAAAGATGTCAAGTACCGATTTGTAATTGATATCCAAGGTTCCCTAAAATGA 1143 40.68 MSSQNSAEDCLGWAARDSSGFLSPYKFSRRVLGDDDVSITITHCGICYADVAWTRNKLGDSKYPLVPGHEIAGIVKNVGSNVHRFKVGDHVGVGTYVNTCRQCEYCENDLEAVCTSGSTYTFNSIDVDGTITKGGYSNYIVTFKQPLKLVEKFSQLFSSKLSEIRTVNFRYCYRIPDNYPLASAAPLLCAGITVYAPMIRHKMNQPGKSLGVIGLGGLGHLAVKFGKAFGLNVTVFSTSISKKEEALSLLGADRFVISSDKEQMEALSKSLDFIIDSASGDHPFDPYMSTLKIGGVMVLVGFPSEVKFSPASLNMGLRTVSGSLTGGTKVTQEMIDFCAAHGIYPNIEVIPIQYSNEAIERVIKKDVKYRFVIDIQGSLK 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33560678 33564608 + Maker00029436 Lcy12g1474 649537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1474 380 FunFam Cinnamyl alcohol dehydrogenase 190 345 - -
Lcy12g1474 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 180 343 IPR036291 -
Lcy12g1474 380 SUPERFAMILY GroES-like 11 222 IPR011032 -
Lcy12g1474 380 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 210 237 IPR029752 -
Lcy12g1474 380 Pfam Alcohol dehydrogenase GroES-like domain 33 142 IPR013154 -
Lcy12g1474 380 CDD CAD1 12 374 IPR047109 GO:0016616(InterPro)
Lcy12g1474 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Lcy12g1474 380 FunFam Putative cinnamyl alcohol dehydrogenase 6 346 375 - -
Lcy12g1474 380 PANTHER ALDEHYDE REDUCTASE 6 376 IPR047109 GO:0016616(PANTHER)|GO:0016616(InterPro)
Lcy12g1474 380 Pfam Zinc-binding dehydrogenase 217 339 IPR013149 -
Lcy12g1474 380 Gene3D - 190 345 - -
Lcy12g1474 380 Gene3D - 13 375 - -
Lcy12g1474 380 SMART PKS_ER_names_mod 14 373 IPR020843 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1474 Lcy-Chr12:33560678 Lcy8g0233 Lcy-Chr8:6209097 1.95E-120 dispersed
Lcy12g1474 Lcy-Chr12:33560678 Lcy8g0232 Lcy-Chr8:6158046 1.65E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1474 K00083 - csv:101211438 629.017