Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1482 ATGAATTTTGGGCTGAATCGTCTCCAGAATCACCATCTCCAGCCAAGAAATAGGCTCGATTTGATCATGGAGCCGCCGGAGCCTGTGGAGGAAGCTGGTTCCGCTGCCCTGGGAGTAGTAGAAGTCGAGAGGGAACACATGTTCGACAAGGTGGTCACGCCGAGTGATGTCGGGAAATTGAACCGACTGGTCATTCCAAAGCAACACGCCGAGAGATTCTTCCCCTTAGATTCCTCCACCAACGACAAGGGTTTGCTCCTCAACTTCGAAGATCGCAACGGCAAATCATGGCGCTTCCGTTACTCTTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAGCGCCTCGACGCGGGTGATATCGTCTCATTCCAACGTGGGGTTGGTGATATTGGAAGAGATCGCCTTTACATTGACTGGCGCCGCCGCCCCGAACTCCCCATCGACCACCACCACAACCACCACTTCCCCACCACCCTCGGCATCCGACCGAGCATCGTCCTCCCCGCCGGTGCTACCGCTTGGGGGTCCCTCGTGTGGCGGCCACTCACCGCACCTGCAGCTGAATACCACCACTACCCAGCTGCCGTAGCGCAGCGGGACCAAGCGCACTTGTCGCAGCAAAGAAACAACAATAACAACAACAGCAACAACAAAGACGATAGTAATGTTATGTATGATTGGAATAGAGGGTGCTGTCCGTACGGATATGGGAGTGGTGTTGAAACATTTTCAAGGGGAAGCCTAAGATTAGGGGAAGAGTTGGAGATGGAGATGGAGGTGGAAGGGAGGAGTAATAATCAGGTGCAGCAAGAGTACAGTAGTGGTGGTGGTGGAGTTGGTTGTTCTTCAATGGTGGTCCAAGAATTAAAAACAAGAACAAAGAGTGGTGAAGAAGATACACCAGTGAAGAAATCAAGGCTGAGGCTTTTTGGTGTAAACATGGAGATGGAGTGTCCAATTTCATCTTCTTCTGAGGAATGTGACTTATTATTGTCTTCTTCTTCTTCTTCTAATTCAAACCCCAAAACCACCACTCACTTCCAATTCCAATTGCCTTCTCCTCATCCTTCTCATCATCATCAATCATGA 1119 50.67 MNFGLNRLQNHHLQPRNRLDLIMEPPEPVEEAGSAALGVVEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDIGRDRLYIDWRRRPELPIDHHHNHHFPTTLGIRPSIVLPAGATAWGSLVWRPLTAPAAEYHHYPAAVAQRDQAHLSQQRNNNNNNSNNKDDSNVMYDWNRGCCPYGYGSGVETFSRGSLRLGEELEMEMEVEGRSNNQVQQEYSSGGGGVGCSSMVVQELKTRTKSGEEDTPVKKSRLRLFGVNMEMECPISSSSEECDLLLSSSSSSNSNPKTTTHFQFQLPSPHPSHHHQS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33788159 33789277 + Maker00029175 Lcy12g1482 649545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1482 372 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 324 IPR044800 GO:0003700(InterPro)
Lcy12g1482 372 CDD B3_DNA 46 135 IPR003340 GO:0003677(InterPro)
Lcy12g1482 372 Pfam B3 DNA binding domain 48 152 IPR003340 GO:0003677(InterPro)
Lcy12g1482 372 SUPERFAMILY DNA-binding pseudobarrel domain 45 154 IPR015300 -
Lcy12g1482 372 SMART B3_2 48 153 IPR003340 GO:0003677(InterPro)
Lcy12g1482 372 MobiDBLite consensus disorder prediction 339 372 - -
Lcy12g1482 372 Gene3D - 41 165 IPR015300 -
Lcy12g1482 372 ProSiteProfiles B3 DNA-binding domain profile. 48 153 IPR003340 GO:0003677(InterPro)
Lcy12g1482 372 MobiDBLite consensus disorder prediction 210 232 - -
Lcy12g1482 372 FunFam B3 domain-containing protein 41 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0904 Lcy-Chr10:28501189 Lcy12g1482 Lcy-Chr12:33788159 5.10E-43 dispersed
Lcy12g1482 Lcy-Chr12:33788159 Lcy4g1005 Lcy-Chr4:17636659 1.33E-72 dispersed
Lcy5g0449 Lcy-Chr5:4695506 Lcy12g1482 Lcy-Chr12:33788159 9.31E-49 transposed
Lcy6g0876 Lcy-Chr6:8911119 Lcy12g1482 Lcy-Chr12:33788159 7.69E-71 transposed
Lcy10g0756 Lcy-Chr10:22710923 Lcy12g1482 Lcy-Chr12:33788159 6.92E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19268 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1482 K09287 - csv:101211271 418.313