Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1487 TTTTTCTCGTTTCAGCTCAATCTCTACTGCTTCAACAGTAGAATCTTCAATCCTTCAAATCTGAGTCTCCCCAGCTCCAACCACAACCTGAGCAATGAGGGCGACCTTGAGAAGCAGAGGGTTGCTCAGCCATCAGCATCAGAGCCCTCTACCAGTGATGATGCTGTTGATCATACACCATTGACAATTGTTGTTTCTAGTGGGGAGCCCAAATCAATCTCTGAAGTTCCTGGGACTCCTCAAGGGGAATTATTGCCTTGTGCAGTTTCCCCCAAAAAGGAGCTCTTGTCTACTACAACTTCTAGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAAAAGGAAGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGTGGTCTGGCAAAAGCTCATCGGACTTGCATAGATACCTGGTTTCGTTCTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCAGCTCCACAATCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACCCCAGATCCTGAAAGGGTAAGAGCAGCACTGCTTCAGTCCACTGTGGCTGGCTTTTGCCATCCTCATAGGGGGTCTGCTTCTGGACATTCTTATATCCATCACCCTTGGCGTTTCGGCATTGCCTGTAAATATCATCATCGAACAGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCCCTGGAGTTCTTACAGGAATGGAATTCAACAAGAGGATCGCAAAGGGTGGAATCAAATGTCACTATCGGGTACTTTCCAGCTATATAG 819 45.91 FFSFQLNLYCFNSRIFNPSNLSLPSSNHNLSNEGDLEKQRVAQPSASEPSTSDDAVDHTPLTIVVSSGEPKSISEVPGTPQGELLPCAVSPKKELLSTTTSSSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRSKGSNRCEICQVVAANVSAPQSHHGTNYWIWRIDPTYRTPDPERVRAALLQSTVAGFCHPHRGSASGHSYIHHPWRFGIACKYHHRTGVIVVLGLGTVFRLALEFLQEWNSTRGSQRVESNVTIGYFPAI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34096723 34099807 - Maker00029441 Lcy12g1487 649550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1487 272 MobiDBLite consensus disorder prediction 27 58 - -
Lcy12g1487 272 SMART ringv_2 106 153 IPR011016 GO:0008270(InterPro)
Lcy12g1487 272 PANTHER ZINC FINGER, RING-CH-TYPE 45 247 - -
Lcy12g1487 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 163 IPR013083 -
Lcy12g1487 272 MobiDBLite consensus disorder prediction 27 57 - -
Lcy12g1487 272 Pfam RING-variant domain 107 152 IPR011016 GO:0008270(InterPro)
Lcy12g1487 272 CDD RING_CH-C4HC3_MARCH 107 153 - -
Lcy12g1487 272 ProSiteProfiles Zinc finger RING-CH-type profile. 99 159 IPR011016 GO:0008270(InterPro)
Lcy12g1487 272 SUPERFAMILY RING/U-box 102 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1487 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g280 . . . . Bpe05g00394 . . . . . . Cma15g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00547 . . . Cmo15g01397 . . . . . . Bhi12g00063 . . Lac11g1863 Hepe06g1415 . Lcy12g1487 . . . . . . . . . . Cme09g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004760 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 4 8 2 42