Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1497 ATGGAAGTGCAAAATCATGATCATGGTCACATAATTGAAGTATGTGGAGATGTGCAAGCTGTAGGGCCTAGCATCGTGGGAAGTAAAATTTGTGGGGAGGCACCCTCCTGTGGATTTTCTGATGTGAAAAACAGTTCAAAGGATGCGAAGGAGCGATCTGCGTCAATGCGGAAGCTTTTCATAGCAGTTGTTCTCTGCATCGTTTTTATGAGTGTAGAAGTAGTTGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTGTTCTCACTCTGGGCCTCTGGCTGGGAGGCAACCCCGCGTCAATCATATGGTTTCTTCCGCATTGAAATACTCGGTGCTCTCGTTTCCATTCAGATGATCTGGCTTCTTGCAGGAATTCTTGTTTACGAAGCTATTGTCCGACTAATCAACGGTCCAGGAGAAGTCAAGGGGTTGCTCATGTTTGCTGTTTCTGCATTTGGGTTAGTTGTTAACATAGCTATGGCTCTGCTGCTTGGTCATGAACATGGTTATGCCCATTCTCATGGTCACAGTCATGGACATGGTGATCATGACCATGGTCATGGCGGCCACGAGCATAGTCACGATGATCATAGGCATCACCATGGGATAAGTGTTACCACACACCACCACCACCATCACCACCATGAAGAAGAGGGAGCTGCCGTCGATGGTGGTAAGCATCATCACGCACACGAGGAATCAGTAACTGCACCCTTGCTCGAGAATTGCTGTGATGATGATTCACAAAAGGTTACCAAGACACAGAAGAAACAACGAAACATAAACGTACAGGGGGCTTATCTTCACGTACTCGGAGATTCCATCCAAAGCATCGGGGTGATGATCGGTGGGGCAATCATTTGGTATAAACCTGAATACAAGATTCTTGATCTGATATGCACCCTCATTTTCTCTGCAATTGTGCTCTGCACAACAATTCAAATGCTCCGAAACATCCTTGAGGTTCTGATGGAGAGCACGCCTCGAGAGATCGACGCGACAAAGCTCGAGAAGGGTCTGTGCGAGATGGATGAGGTAGTTGCAATCCATGAACTGCACATCTGGGCCATAACTGTTGGAAAGGTTCTATTGGCATGCCATGTTATAGTAAAGCCAGAGGCAAATGCAGACATGGTATTGGACAAGGTTATAGAGTATATCAGACGAGAGTACAACATCAGCCATGTCACTATTCAGATAGAGCGCCAGTAG 1263 46.0 MEVQNHDHGHIIEVCGDVQAVGPSIVGSKICGEAPSCGFSDVKNSSKDAKERSASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIAMALLLGHEHGYAHSHGHSHGHGDHDHGHGGHEHSHDDHRHHHGISVTTHHHHHHHHEEEGAAVDGGKHHHAHEESVTAPLLENCCDDDSQKVTKTQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKVLLACHVIVKPEANADMVLDKVIEYIRREYNISHVTIQIERQ 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34398354 34403468 - Maker00029407 Lcy12g1497 649560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1497 420 MobiDBLite consensus disorder prediction 189 249 - -
Lcy12g1497 420 MobiDBLite consensus disorder prediction 228 249 - -
Lcy12g1497 420 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 342 IPR027469 -
Lcy12g1497 420 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 27 419 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Lcy12g1497 420 Pfam Cation efflux family 59 341 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1497 420 Gene3D Cation efflux protein transmembrane domain 55 340 IPR027469 -
Lcy12g1497 420 MobiDBLite consensus disorder prediction 189 219 - -
Lcy12g1497 420 NCBIfam cation diffusion facilitator family transporter 56 420 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1497 420 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 347 418 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0152 Lcy-Chr11:1662602 Lcy12g1497 Lcy-Chr12:34398354 1.58E-85 transposed
Lcy10g0308 Lcy-Chr10:5569782 Lcy12g1497 Lcy-Chr12:34398354 5.85E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1497 K14689 - csv:101213602 639.802