Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1498 ATGGTCGAGGTCTTCCTCCGCCATCCGACAGGTAATGCAACAAAAAGGCTCAATCAAGCAAGTGATCTTTCTGGAGAGCCGATCAGGCCCGAGCCAATCAAGCAAGGTACCTATCCTTATTCATTGGAACATAACTTTGAGATTCAGCCTATGGAGGAATGGGCACTTGCAATTGCAACAGTAACAGGAGGAATGTTTGTAGTGAAGATAGTGGCAACTGGTATTGTATTTCTGGAGGAATTCAATGGTCAGAAGGTTGATAATTGCTGTCATGTAGGAGTTGAAAAAGGATCAAAGGATCCAAAGGCAGAGAAAGTGGGAAAGATAACCATTGAACAGTTGCGTACGATTGCTGCTGAAAAGTTACCAGATTTGAATTGCACAACCATTGAATCTGCAATGAGAATCATTGCAGGTACGGCAGCCAATATGGGAATTGAGGTTGACCCTCCTGTCCTTGAACCTAAAAAGAAGGAACTTGTGTAG 486 43.42 MVEVFLRHPTGNATKRLNQASDLSGEPIRPEPIKQGTYPYSLEHNFEIQPMEEWALAIATVTGGMFVVKIVATGIVFLEEFNGQKVDNCCHVGVEKGSKDPKAEKVGKITIEQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIEVDPPVLEPKKKELV 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34445309 34447973 - Maker00029461 Lcy12g1498 649561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1498 161 SMART rl11c 57 149 IPR000911 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy12g1498 161 Pfam Ribosomal protein L11, RNA binding domain 92 148 IPR020783 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy12g1498 161 PANTHER 60S RIBOSOMAL PROTEIN L12 92 156 IPR000911 GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005762(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0006412(PANTHER)|GO:0015934(PANTHER)|GO:0070180(PANTHER)
Lcy12g1498 161 ProSitePatterns Ribosomal protein L11 signature. 135 149 IPR020785 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lcy12g1498 161 Gene3D - 89 161 IPR036769 -
Lcy12g1498 161 SUPERFAMILY Ribosomal protein L11, C-terminal domain 92 149 IPR036769 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1498 K02867 - - csv:101210200 130.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1498 Lcy-Chr12:34445309 Lcy2g2159 Lcy-Chr2:43831419 9.69E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g268 . . . . . . . . . . . Cma15g01332 . Car15g01197 . . . . . . . . . . . . . . . . . . . . . . Csa05g00149 Chy09g01346 . . . . . . . . . . . Cmo15g01394 . . . . . . Bhi12g00069 . . Lac11g1879 Hepe06g1420 . Lcy12g1498 Cla01g00132 Cam01g0134 Cec01g0135 Cco01g0136 Clacu01g0130 Cmu01g0132 Cre09g2373 Lsi09g00123 . . Cme09g01894
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063072 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1