Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1510 ATGACCGTTCCTGCTTCCGGTTTTATCATGGAAAACGGCGGATCAAGCTGCCTGCCACTCCCCCCAGATGTCGAGAATCGGATCGTTTCCGACCTGGCCAAGGAATCCGAGTCTAATTTGAAGGAGGGCAATCTCTACTATGTTGTTTCTAATAGGTGGTACAGAAGGTGGCAATTGTATGTCGGACAGCCCACTGAAGAATTTTCAAGCAGAGATCATTCGTCTGATTCCCAACACTTCAATATGGTTCCTTTAAATGTGGCTGAAAGACCCGGTCCTATCGATAATTCAGATATAATCATTAATGGAAGTGATTCTGAGAGCAACGATTTAGAGCTAAAAAGATTTTTGGAGGAACGACGGGATTACGTTTTGGTTCCCAGTGAAGTTTGGGAAAAACTTTATGATTGGTATAAAGGGGGGCCACCGTTACCAAGAAAGTTGATATCCCAAGGTGTCACTCAAAAGAATTTTTATGTGGAGGTTTATCTGCTTTGTCTAAAATTGATTGATTCCAGAGATGGCAGTGAATCTACCGTACGATTGAGCAAGAAGGCCACCATTTTTGATCTTCGTGAGAAGGTGTTTGCACTTAAAGGAATAAAGCAAGAAAAGGCGTGTATATGGGACTACTTCAACAAACAGAAACAATCAGTATTGGATGCAACAAGCCAAACACTCGAAGAACTAAACTTGCAGATGGATCAACATATCCTCCTTGAAGTTGATGGACCTACTCCTCAGATCGGCATGGATGCCACTCGAAATGAGTTAGCTTTGGTAGCCCTGGAACCTTCAAGGTCACCTCTATCAATTGCAGGGGGACCCGTGATGTCAAATGGACATTCATCCGGTTATAGTTATCAGGGAAGTTCTTTAAGCACATCAGTTTCTGACATGGATGATAGAAATGACGTTAGTAATACTGCAAAGAAAAGAGAGAGGGGTGGTTTGGCAGGGTTGCAGAATTTAGGAAATACATGTTTCATGAATAGTGCCCTTCAATGTTTAGTTCACACGCCGCCCCTTGTAGAGTATTTTTTACAAGATTATTCTGAAGAGATCAACGCAGAGAACCCTTTGGGAATGCACGGAGAGTTAGCCCTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCGTCTGGACAAACCACAATTGCACCACGTGTATTTAAGGGAAAGTTAGCTCGTTTTGCTCCCCAGTTCAGTGGTTATAACCAGCATGATTCCCAAGAACTTCTTGCCTTCTTACTGGATGGATTGCATGAAGATTTGAATCGTGTTAAAAGGAAGCCTTATTTTGAAACAAAGGATTCTGATGGTCGTCCAGATGTAGAAGTTGCAGACGAATGTTGGAGATACCATAAAGCTCGAAACGATTCTTTAATTGTGGATGTTTGTCAAGGTCAATACAAGTCAACATTGGTTTGTCCAGTTTGTGGAAAAATCTCAATTACTTTTGATCCATTTATGTATTTGTCACTGCCGCTACCTTCAAGTGTCACTCGCAGTGTGACAGTGACTGTGTTCTACGGTGATGGTAGTGGTCTTCCAATGCCATTCACTGTGACAGTGCCAAGACATGGTTCCACCAAAGATCTCACCCATGCATTGGCTTTAGCATGCTGCTTGAAGAGTGATGAAAATCTTCTGCTTGCAGAGGTTTATGATCACCGGATTTACCGATATTTTGATAACGGTCTTGAGTCTTTGACTTCAATTAAAGATGAAGAGTATCTAGTTGCGTATCGCCTTCCAAAAAGGGAATCTGGAAGACCAAAGCTAGAGATCATTCACAGATCGCTGGAAAAATGCTCAACGGACCGTCTGAAGGGATTGGAGAGAAAGCTTTTTGGAACTCCTCTAGTCACATATTTGGGAGAAGATTTCCATAGTGGAGCTGACATAAATGTAGCTGTGTCTAAGATCCTCTTTCCCTTGCGAAGAACATACTCTTCAACTAAAGCCCATAGTAGCAAAGAAAATGGCTTTGTTTCTGAAATGAATGATGAACCATCCAACTGCAGTCCTCAGTCTGTTTCTAGGAGCCAGTCAATTGACATTGAAGTAGAGGAAACATCTGAAAAAGAGTCATCCTTTCAACTTCTTTTAACCGATGATAGGGGTTTGAGCTGCAAGCCGATTGAGAAGGATTCTGCTATAAAATATGGTCCACTTATAAAGGTTTTCTTGGATTGGACTGACAGAGAACATGAATTATATGATGTGGGCTACATCAAGGATCTTCCTCCTGTTCACCAGACAAGGTTCATGAAGAAAACACGGCAGGAAGCAATCTCTTTATTTTCTTGCTTGGAAGCATTCCTGACTGAAGAACCTTTAGGTCCTGATGATATGTGGTACTGCCCTAGGTGTAAGGAGCACAGACAGGCTACAAAGAAGTTAGATTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAACGTTTTTCGTACAGCAGATACCTTAAAAACAAACTCGATACCTTTGTTGATTTCCCAATTCACAATCTTGATTTGAGCAAATATGTCAAAAGCAATGATGGAAAATCCTACTTATACAACCTATATGCCATTAGCAATCATTATGGTGGTCTTGGCGGTGGGCATTACACTGCATATGCAAAGTTAATTGATGAGAAGAGGTGGTACCACTTTGATGACAGTCACGTTTCCCCGGTTGGTGAAGAAGAGATCAAGACATCGGCTGCTTATTTGTTCAAATCTGCCTCTAGAGGCGATGTGGCGGTTGACATTCATTTGTTAGCTGTTACCATGGTGGCTGCTGGCCATTTTCTCTTGTTACTTCTACGTGCTCCTGTTGTTACTGATTAA 2838 41.72 MTVPASGFIMENGGSSCLPLPPDVENRIVSDLAKESESNLKEGNLYYVVSNRWYRRWQLYVGQPTEEFSSRDHSSDSQHFNMVPLNVAERPGPIDNSDIIINGSDSESNDLELKRFLEERRDYVLVPSEVWEKLYDWYKGGPPLPRKLISQGVTQKNFYVEVYLLCLKLIDSRDGSESTVRLSKKATIFDLREKVFALKGIKQEKACIWDYFNKQKQSVLDATSQTLEELNLQMDQHILLEVDGPTPQIGMDATRNELALVALEPSRSPLSIAGGPVMSNGHSSGYSYQGSSLSTSVSDMDDRNDVSNTAKKRERGGLAGLQNLGNTCFMNSALQCLVHTPPLVEYFLQDYSEEINAENPLGMHGELALAFGELLRKLWSSGQTTIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKRKPYFETKDSDGRPDVEVADECWRYHKARNDSLIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSLPLPSSVTRSVTVTVFYGDGSGLPMPFTVTVPRHGSTKDLTHALALACCLKSDENLLLAEVYDHRIYRYFDNGLESLTSIKDEEYLVAYRLPKRESGRPKLEIIHRSLEKCSTDRLKGLERKLFGTPLVTYLGEDFHSGADINVAVSKILFPLRRTYSSTKAHSSKENGFVSEMNDEPSNCSPQSVSRSQSIDIEVEETSEKESSFQLLLTDDRGLSCKPIEKDSAIKYGPLIKVFLDWTDREHELYDVGYIKDLPPVHQTRFMKKTRQEAISLFSCLEAFLTEEPLGPDDMWYCPRCKEHRQATKKLDLWKLPEIIVFHLKRFSYSRYLKNKLDTFVDFPIHNLDLSKYVKSNDGKSYLYNLYAISNHYGGLGGGHYTAYAKLIDEKRWYHFDDSHVSPVGEEEIKTSAAYLFKSASRGDVAVDIHLLAVTMVAAGHFLLLLLRAPVVTD 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34653955 34667424 - Maker00029188 Lcy12g1510 649573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1510 945 Gene3D - 9 162 IPR035927 -
Lcy12g1510 945 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843(InterPro)
Lcy12g1510 945 MobiDBLite consensus disorder prediction 661 686 - -
Lcy12g1510 945 CDD Peptidase_C19R 758 908 - -
Lcy12g1510 945 Gene3D Cysteine proteinases 302 515 - -
Lcy12g1510 945 MobiDBLite consensus disorder prediction 284 303 - -
Lcy12g1510 945 SUPERFAMILY DUSP-like 19 149 IPR035927 -
Lcy12g1510 945 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 319 913 IPR028889 -
Lcy12g1510 945 Gene3D - 163 246 - -
Lcy12g1510 945 SUPERFAMILY Cysteine proteinases 317 908 IPR038765 -
Lcy12g1510 945 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 320 335 IPR018200 GO:0004843(InterPro)
Lcy12g1510 945 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 855 872 IPR018200 GO:0004843(InterPro)
Lcy12g1510 945 Pfam Ubiquitin carboxyl-terminal hydrolase 319 907 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Lcy12g1510 945 Coils Coil 213 233 - -
Lcy12g1510 945 MobiDBLite consensus disorder prediction 284 314 - -
Lcy12g1510 945 Pfam DUSP domain 44 149 IPR006615 GO:0004843(InterPro)
Lcy12g1510 945 Gene3D Cysteine proteinases 643 909 - -
Lcy12g1510 945 SMART dusp 39 152 IPR006615 GO:0004843(InterPro)
Lcy12g1510 945 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 93 907 IPR050185 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1510 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0359 Lcy-Chr11:6027123 Lcy12g1510 Lcy-Chr12:34653955 3.60E-20 dispersed
Lcy11g0362 Lcy-Chr11:6051066 Lcy12g1510 Lcy-Chr12:34653955 2.61E-126 dispersed
Lcy12g1510 Lcy-Chr12:34653955 Lcy8g2027 Lcy-Chr8:46501577 1.08E-212 dispersed
Lcy12g1510 Lcy-Chr12:34653955 Lcy11g0361 Lcy-Chr11:6044373 2.97E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40