Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1527 ATGGCGACCGAGATCGCGAAGGAGCCGATCGAGGCCGATCGAACCGTCGTAGAAGAAGGCGGAGGATCGAGCAAGGAGTTGCGGTGGAAGAGGCTTCAACCATGGACGAGGCAATTGACAGTGAGAGGAGTAACAGTGAGCATCATTATTGGAAGCATTTACAGTGTCATAGCCATGAAACTGAATCTCACTACTGGACTTGTTCCCAATCTCAACGTCTCTGCCGCTCTTCTTGCGTTCGTCTTTGTACGAACGTGGACCAAAACGCTTGAAAAGGCTGGCTATGTTGCCAAGCCCTTCACTCGTCAAGAGAATACCATGATCCAAACTTGCGCGGTTGCATGTTACAGCATCGCAGTTGGAGGTGGATTTGCTTCGTATCTGTTGGGGATGAACAGAAAGACATATGAATTATCTGGAGTGAAGACAGAAGGGAATTCTCCGTACAGTGTGAAAGAGCCGGGATTGGGATGGATGACTGGCTTTCTTTTTGTGGTTTGCTTTGTGGGTCTTTTTGTTTTGATTCCTCTAAGAAAGGTTATGATAGTGGACCTGCAATTGACATATCCTAGTGGCATGGCGACAGCAGTTCTGATAAATGGCTTTCACACTCAGGGCGATGAGATGGCAAAGAAGCAAGTTAAAGGGTTTATGAAGTACTTTTCATTCAGCTTCTTATGGGCATTTTTCAAGTGGTTCTTTTCTGGGAAAGAGAAGTGTGGATTCTCTGAGTTCCCCACTTTTGGACTCAAAGCTTGGAAGCAAACATTCTTCTTCGATTTTAACACAACTTTTGTGGGAGCAGGGATGATTTGTTCCCACTTAGTGAACTTGTCTTTGCTTCTAGGAGCCATTCTCTCTTATGGCCTAATGTGGCCTCTTCTTGATCGACTCAAAGGCCGTTGGTACCCTGAGAGCTTGGAAGAAAGTGACATGAAGAGTTTATATGGATACAAGGTCTTTTTATCTGTTTCTTTGATTCTTGGAGATGGACTTTACAACTTCATCAAGATTCTTGCTTCAACCATCATAAATGTTCACCACAGAGTCAAGAAAGCAAAAACAGGTTTAGAGAACAAGGAGAAAGCATCATCAAGAGACGAAAAGCAAGACGAAATGTTCTTGCGAGAAAGCATCCCACTGTGGCTGGGCCTGATCGGCTACCTGAGCTTCGCCGCAATCTCCACCATCGCGATCCCTCAAATGTTCCCTCAGCTCAAATGGTACTTCGTCATCACCGCCTACATCCTCGCCCCCTCCCTCGCCTTCTGCAACGCTTACGGCGCCGGCCTCACCGACATCAACATGGCCTACAACTACGGCAAGGTCGCCCTCTTCCTCCTCGCCGCCCTCAGCCCCAAGCACGACGCCCTCATCGCCGGCCTCGCCGGCTGCGGCCTCATCAAGTCCGTCGTCTCCGTCGCCTGCATTCTCATGCAGGACTTCAAGACCGCCCACCTAACCTCCACCTCCCCCCGAGCCATGTTCGTCAGCCAGCTCATCGGCACCGCCGTCGGCTGCGTCACCGCGCCCCTCAGCTTCTTCCTCTTCTACAAGGCCTTCGACGTCGGCAATCCGGACGGCGAGTTCAAGGCGCCCTACGCTTTGATTTACAGGAACATGGCGATCTTGGGAGTGGAGGGGGTGTCGGCTTTGCCCGACCACTGCCTTCAGATCTGTTATGGGTTTTTCGGGTTGGCGATTGGGGTGAACTTGGTGAAGGACTTCGGCGGCCGGAGAGTCGGGAAGTGGATGCCGTTGCCGATGGTGATGGCGGTGCCGTTTCTGGTCGGTGGGTACTTTGCGATCGACATGTGTTTGGGGAGTTTGATCGTGTTTGTTTGGGAGAAGTTGAATAGGGAGAAGGCGGAGATGATGGTGCCGGCGGTGGCTTCCGGCCTCATTTGTGGGGAAGGGCTTTGGACTTTGCCGGCCTCTGTTCTTGCTCTTGCTAAGATTAATCCTCCTATTTGTATGAAGTTTGTGCCCTCCTAG 1995 50.83 MATEIAKEPIEADRTVVEEGGGSSKELRWKRLQPWTRQLTVRGVTVSIIIGSIYSVIAMKLNLTTGLVPNLNVSAALLAFVFVRTWTKTLEKAGYVAKPFTRQENTMIQTCAVACYSIAVGGGFASYLLGMNRKTYELSGVKTEGNSPYSVKEPGLGWMTGFLFVVCFVGLFVLIPLRKVMIVDLQLTYPSGMATAVLINGFHTQGDEMAKKQVKGFMKYFSFSFLWAFFKWFFSGKEKCGFSEFPTFGLKAWKQTFFFDFNTTFVGAGMICSHLVNLSLLLGAILSYGLMWPLLDRLKGRWYPESLEESDMKSLYGYKVFLSVSLILGDGLYNFIKILASTIINVHHRVKKAKTGLENKEKASSRDEKQDEMFLRESIPLWLGLIGYLSFAAISTIAIPQMFPQLKWYFVITAYILAPSLAFCNAYGAGLTDINMAYNYGKVALFLLAALSPKHDALIAGLAGCGLIKSVVSVACILMQDFKTAHLTSTSPRAMFVSQLIGTAVGCVTAPLSFFLFYKAFDVGNPDGEFKAPYALIYRNMAILGVEGVSALPDHCLQICYGFFGLAIGVNLVKDFGGRRVGKWMPLPMVMAVPFLVGGYFAIDMCLGSLIVFVWEKLNREKAEMMVPAVASGLICGEGLWTLPASVLALAKINPPICMKFVPS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35084247 35091476 - Maker00029186 Lcy12g1527 649590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1527 664 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 25 663 IPR045035 GO:0005886(PANTHER)|GO:0010039(PANTHER)|GO:0016020(PANTHER)|GO:0035673(InterPro)|GO:0048316(PANTHER)|GO:0051980(PANTHER)
Lcy12g1527 664 Pfam OPT oligopeptide transporter protein 38 648 IPR004813 GO:0035673(InterPro)
Lcy12g1527 664 NCBIfam OPT family oligopeptide transporter 33 647 IPR004813 GO:0035673(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1527 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0055 Lcy-Chr12:814914 Lcy12g1527 Lcy-Chr12:35084247 3.20E-206 dispersed
Lcy12g1527 Lcy-Chr12:35084247 Lcy6g0014 Lcy-Chr6:219815 7.62E-299 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104