Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1534 ATGAGTTGCGCTTCGGATTTCATGTCTGGGAATTCTGAGGCTGATGATCGTGAGATTGTCGAGAAGGATCCAACTGGACGATATATTCGGTACGATGAGATTTTGGGTAAAGGCGCATTCAAGACAGTTTACAAAGCATTCGATGAAGTTGGTGGAATTGAAGTTGCTTGGAGCCAAGTGGACATTGAAGAGGTTTTGCAGTCACCGGAACAACTTCAAAGATTATATTCTGAGGTTCATTTGCTGAAGTCTCTGAAACATGAGAATATCATCAAGTTCTGTAGCTACTGGGTTGATGATAAGAATAAGACTATCAACATGATAACAGAATTGTTCACTTCTGGGAGTTTGAGGCAATATCGAAAGAAGCACAGGAAAGTTGACTTGAAGGCCTTCAAGAACTGGGCAAGGCAGATACTGCGGGGTTTAACGTATTTGCATGGTCACAGCCCTCCAATTATTCACAGGGATTTGAAATGTGATAATATTTTTGTCAATGGAAATACTGGAGAAGTTAAAATTGGAGATCTCGGATTGGCGATTGTCATGCAGCAGCCTACTGCACGAAGTGTTATTGGCACTCCAGAGTTCATGGCTCCAGAGCTTTACGATGAGGACTATAATGAACTTGTGGACATCTATTCTTTTGGCATGTGCATGTTGGAAATTGTTACTTGTGAATACCCATATAATGAGTGCAAAAATTCTGCCCAAATATTCAAGAAGGTTACTTCTGGTATAAAGCCTGCTTCCCTTGAAAAAGTGTTGGACCCTCAAGTTAAGCAGTTCATAGAGAAGTGTCTTGTTCCAGCATCCATGAGACTACCTGCAAGTGAACTATTGAAAGATCCATTCCTTGCAACTGATAATTCAAAGGAGCATAGTTCTGAGCATTCAAGGTTATTGAATGCACAGTTCAAATCAGTAAATCCTCCACTGCTGGCTACTAATCCAATGGACATAGACCATAACTGCAGCAAACTCTCAGGCTCAGTGGCCTCATCTGTCAAAAGCAACAATGAAATTTCTCACTTTTCAACTCTTGAACTTCAGAGGCTTACTGAGAATAATGAATTGACGCTGAAAGGGGACATGACTGATCATAATACAATTTCATTTCATTTGCGCATTGCTGAACTATGTGGTAAATCGAAGAATATTCATTTTGCCTTCTTTCTTGATTCCGATACTGCTTTGGCAATTGCTTTGGAGATGGTTGAACAACTGGAACTGTCAAATGAAGATGCGACCGTCATAGCTAAATTGATAGATGAATTAATTGCCAAGTTTGTTCCCAGCTGGAAACCATGTACAAATTATTGTCATGGACAAAATACTGCACATAGTTGTTCTGAAACTCAAGAGGACAAGACCTTCGCTCCTCTCTTCTCTGAGCTGGTACTATCATCTCCCTTGGTGGCTGCTGCTGGGAAAACTCCGACGCATTTGGGCGAGGTGGAAGATCAAGAAAACCCGCAGACGATTATTTCGTGTGCATCTCTGGACTACAATCACTCAACTATCTCAGATTACAGCATTGGAAAAGGATCAGAGTGTGGTGACTTCTGCCACCCTGAATGCGACAAAGCTTTTACTAGCAGTGGAACAATCGATTTAGATGTTGTTGGATCTATTCCGACAATGATCGATTTTGCAAAACCATCACTGATCTCCTCCTGCTCAGGAATGTCCAAAGAATTGAGTTTGTCTAGCTTTTCCACTCTTTCTCTGGAAGAAAGAGACCACCATGATGAACTCAAGCTGGAGATTGATGCTATTGACTTGCAGTACCACCAGTGCCTTTGTGAACTGTCAAGAATGAGAGAGGAAGCAATAGAAAGTGCCAAGAAGAGGTGGATGTCAAAGAAGAAAGCTTCTGCTAATTGA 1887 41.39 MSCASDFMSGNSEADDREIVEKDPTGRYIRYDEILGKGAFKTVYKAFDEVGGIEVAWSQVDIEEVLQSPEQLQRLYSEVHLLKSLKHENIIKFCSYWVDDKNKTINMITELFTSGSLRQYRKKHRKVDLKAFKNWARQILRGLTYLHGHSPPIIHRDLKCDNIFVNGNTGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYDEDYNELVDIYSFGMCMLEIVTCEYPYNECKNSAQIFKKVTSGIKPASLEKVLDPQVKQFIEKCLVPASMRLPASELLKDPFLATDNSKEHSSEHSRLLNAQFKSVNPPLLATNPMDIDHNCSKLSGSVASSVKSNNEISHFSTLELQRLTENNELTLKGDMTDHNTISFHLRIAELCGKSKNIHFAFFLDSDTALAIALEMVEQLELSNEDATVIAKLIDELIAKFVPSWKPCTNYCHGQNTAHSCSETQEDKTFAPLFSELVLSSPLVAAAGKTPTHLGEVEDQENPQTIISCASLDYNHSTISDYSIGKGSECGDFCHPECDKAFTSSGTIDLDVVGSIPTMIDFAKPSLISSCSGMSKELSLSSFSTLSLEERDHHDELKLEIDAIDLQYHQCLCELSRMREEAIESAKKRWMSKKKASAN 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35161832 35165742 - Maker00029421 Lcy12g1534 649597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1534 628 CDD STKc_WNK 27 286 - -
Lcy12g1534 628 Gene3D Transferase(Phosphotransferase) domain 1 112 294 - -
Lcy12g1534 628 Gene3D Phosphorylase Kinase; domain 1 12 110 - -
Lcy12g1534 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1534 628 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 384 428 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lcy12g1534 628 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1534 628 ProSiteProfiles Protein kinase domain profile. 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1534 628 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 456 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy12g1534 628 FunFam probable serine/threonine-protein kinase WNK9 112 291 - -
Lcy12g1534 628 FunFam Probable serine/threonine-protein kinase WNK1 14 110 - -
Lcy12g1534 628 Gene3D - 369 465 - -
Lcy12g1534 628 SMART serkin_6 29 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1534 628 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2067 Lcy-Chr11:44254479 Lcy12g1534 Lcy-Chr12:35161832 1.39E-88 dispersed
Lcy12g1534 Lcy-Chr12:35161832 Lcy4g1952 Lcy-Chr4:45859161 4.14E-140 dispersed
Lcy12g1534 Lcy-Chr12:35161832 Lcy13g0281 Lcy-Chr13:3072507 2.20E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65526 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1534 K08867 - csv:101207748 1070.46