Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1540 ATGGATACTGCTCAATGGCCACAGGAGATTGTGGTGAAGCCCATTGAAGAAATTGTGACAAACAACACTTGCCCAAAAGCAGGTGGTGTTTCAGTTTTGGAGAGGAAAATTAGACCCCAAAAGGAACAAGCTTTGAACTGTCCAAGGTATTGGACTGAAGGAGGATCTTTGAGAAACATTCCTGTTGGAGGAGGCTCAAGGAAGAACAAGAGACCTTCTTCTTCTTCTTCTTCATCCACATCTCCCACATGTGCCAACAATAATAATAATCCTCTTCCAAAGAAAAATATTTCTCATCTCCCACAAAACCCTAAATCCACCCACTCCCAAGATCTCAACTTGTCCTTCCCACCATCATCTCATCATCATTTCACTCCCAATCTCTCCGAAATCGTCGTCGGTGGGAACCCTACGATCGCCTCTGCCTCCGCCTCTTCCACGACTCAGCTTTCGGCCATGGAGCTTCTCACCGGGATGGCGAGTAACTCTAGGGGTTTGAATTGTTTCGTTCCAATGCCGCCCGTTGTCCCTGATCCTGGCTCAGTGTACACGGCGGGGTTTCCCGATCTCCACGATCAGTTCAAGCCGAGCCTCGGATTCTCTCTCGATGGATATGGCGTCGTCCCGACCGAGGCTAGCAATGGCGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGTTGAGCAAGGCAAAGAGCAAGGAGATTCAACTGGGTATTGGACTGGGATGTTGGGTGGAGGATCATGGGAAGAGAGAATTGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAATCCGATCAAGATCCTTCAGTTCAGAAACAATTGGGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCCCAGTTGTCAGACGCACGAATGAATTGAAGAAGTCGCTCAGGCGAATTGAGGCATCAAAGTGGAAGGCCAGAGCAGTTGCTAAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGAGATACCACTTAGCTGAAGTGGGAATACGTGTCTGTCTTTTTCGTCTGGGAGACAGGTATTTTGAGCCTTGGAGTTTTACCAAGAAGATCAGAGATAACAATTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATCGTTGTTTTGTCTCCAAGTGGGAAATTGTTGGAGGTGGATGCAAATCACCGTCTCGATTGTCGTGCGAAAATACAAAAGGAAAAGGAATGCTAATGGGCTTCCTGTAATTTCCCAAATTCTAGTAGAACCTGTAGTTGCAGAAGACTGGACGTAG 1329 47.4 MDTAQWPQEIVVKPIEEIVTNNTCPKAGGVSVLERKIRPQKEQALNCPRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSSTSPTCANNNNNPLPKKNISHLPQNPKSTHSQDLNLSFPPSSHHHFTPNLSEIVVGGNPTIASASASSTTQLSAMELLTGMASNSRGLNCFVPMPPVVPDPGSVYTAGFPDLHDQFKPSLGFSLDGYGVVPTEASNGGGRLMQLPFEDLKQGSNGVEQGKEQGDSTGYWTGMLGGGSWEERIVEPAARIANFDQSDQDPSVQKQLGSPGEKVDGYRESPVVRRTNELKKSLRRIEASKWKARAVAKEQLFGLEEDDRRYHLAEVGIRVCLFRLGDRYFEPWSFTKKIRDNNCSGSRSLEFAKMFRVLLQWETRSLFCLQVGNCWRWMQITVSIVVRKYKRKRNANGLPVISQILVEPVVAEDWT 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35237276 35244777 - Maker00029237 Lcy12g1540 649603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1540 442 MobiDBLite consensus disorder prediction 68 121 - -
Lcy12g1540 442 Pfam Dof domain, zinc finger 46 71 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy12g1540 442 MobiDBLite consensus disorder prediction 56 121 - -
Lcy12g1540 442 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 133 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1540 442 MobiDBLite consensus disorder prediction 269 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1540 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1540 Lcy-Chr12:35237276 Lcy1g1120 Lcy-Chr1:10310623 2.50E-47 dispersed
Lcy12g1540 Lcy-Chr12:35237276 Lcy3g0085 Lcy-Chr3:2155185 2.39E-17 wgd
Lcy12g1540 Lcy-Chr12:35237276 Lcy8g0472 Lcy-Chr8:15394452 1.45E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19271 None None None None Lcy TF