Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1541 ATGATGGATTTGATTCACTGTGAGGAGGAAATTGAAAGATTCTATGATACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGTAGCACAAGTTTTGGGGATGATAGAGAAGTTCCTGAAAATTTAGGATATGGGGGTTGGATAAGAAACCTGGAAAGTGTTTATGAGCGCAGAAACAAGTTCTTCAAATGGATGGGTCTGGATTTGGATTTGGATCAGAATTTTGATGACAGAGATGAAGAGGAAGGGGTTTCGTTCGGGAGGGGTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCAGGTTCTGAAGGGGAGTTGTCTTCAAGTCTTACCTTGTCTTCCATGTCAAATGAAGGTCCGGAATCATCTGGAAATGTTGCTGTGGAGGAGAATTATGCTTGTACCATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAATGTTGAGCATGTTACGCGAAGTTGGTTCGAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAGACTCCCTTGGTTCAGCAACTCTTTCGTAAAAATGTTGAACAGGCTGGGCCTATAGTCAATGCCAGGAAAGAGGCCAAAAAGGGTTGGTTGAGAAAATTGGGTGCGGTGGCTTGTATAGTTGACAACGGTGAGGGCGCAATGAAGCGTGATGTTCTCAATTCATCATCTAAGACAGGGATACAACAAGTTCGTGTTCATCCGTATAAAAAGCAGTCCAAGGAATTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACATAAAGGGTCAATTTCCACAATGAAGTTCAGTTTTGATGGAAGATACTTAGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGAATTGATAATTTCGACATTCACGATGTTGATCCTTCCTCTCTGTATTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTGCCAAAAGAGAGTGTAGGCAAGACGAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTTTGCACGAGTTCTCAGGACACAGTGGCGAAGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTTTGCTGTCATCTTCTGTTGATAAGACAGTACGTCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTACGTAACCTGTGTTAGTTTCAACCCTCTAGATGAAAATCATTTCATAAGTGGCTCAATAGATGGTAAAGTTCGGATCTGGGAGGTTCTTGCTTGTCAAGTTGTTGATTATATCGATATCCGTGAGATAGGAGGAATTGTGGGGTCTATGACTGGAAACTGCCGTTTCTATAATATTATAGATAATCGATTGGAGCTCGATGCTCAGATATGCTTAAATGGGAAAAAGAAATCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGCGACCCGAGTAAACTAATGGTCTCTTCTGTTGATTCACCGGTTCATATAATTTCCGGGGTTGATGTCATTTGCAAATTCAAGGGTCTTCGAAACAATGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGCGAAGAAAGTGTCTATGTTTGGAACTACAATTGCAAGGACAAAGCATCTCGGAAAAAGAAAATTTGGTCATCCGAAAGCTTCTTCTCTCGTAGCGCGACAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCATTGTCCCCAGCACGAGTTTGTGATACAGCAGGAAGTATCCCCGAAATGGAGCCGAAGTATCCCGATGATGATGGTGATAGAGAACACAAGGTTCCATCGTCATCACCAGATTGCTTCTCTCTAAGCCGTACCCTTTTTCCCGAGTTGCTCAAAGGAAGTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCTATGACCCCTTCACCGTCCATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAAAGCATGCTTAGCTCTCCACACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGATGGACGGATCAGAACATTTCTCAACTACGGTTTGCCTATTCGGTTATGA 2202 42.78 MMDLIHCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDREVPENLGYGGWIRNLESVYERRNKFFKWMGLDLDLDQNFDDRDEEEGVSFGRGYRDRILEDCGTVLRLSGSEGELSSSLTLSSMSNEGPESSGNVAVEENYACTIRNLDNGTEFIVDSFSQDGMLSMLREVGSNRSFSFDEFERNIGQTPLVQQLFRKNVEQAGPIVNARKEAKKGWLRKLGAVACIVDNGEGAMKRDVLNSSSKTGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRIDNFDIHDVDPSSLYFSMNHLSKLDPLDVPKESVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFSGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPLDENHFISGSIDGKVRIWEVLACQVVDYIDIREIGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVSSVDSPVHIISGVDVICKFKGLRNNGNKMSASFTSDGKHIVSASEESVYVWNYNCKDKASRKKKIWSSESFFSRSATIAIPWSGVKITPEPPLSPARVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGSATWPEEKLHDSSSMTPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35310825 35316307 + Maker00029232 Lcy12g1541 649604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1541 733 MobiDBLite consensus disorder prediction 630 646 - -
Lcy12g1541 733 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 410 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 SMART WD40_4 492 532 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 SMART WD40_4 268 307 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 SMART WD40_4 371 409 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 SMART WD40_4 533 573 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 SMART WD40_4 412 451 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 308 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 SUPERFAMILY WD40 repeat-like 272 723 IPR036322 GO:0005515(InterPro)
Lcy12g1541 733 PRINTS G protein beta WD-40 repeat signature 438 452 IPR020472 -
Lcy12g1541 733 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Lcy12g1541 733 PRINTS G protein beta WD-40 repeat signature 294 308 IPR020472 -
Lcy12g1541 733 Gene3D - 469 726 IPR015943 GO:0005515(InterPro)
Lcy12g1541 733 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 308 - -
Lcy12g1541 733 Pfam WD domain, G-beta repeat 414 450 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 Pfam WD domain, G-beta repeat 273 306 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 Pfam WD domain, G-beta repeat 373 408 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 452 IPR001680 GO:0005515(InterPro)
Lcy12g1541 733 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 452 - -
Lcy12g1541 733 PANTHER WD REPEAT DOMAIN 44 12 733 IPR040324 -
Lcy12g1541 733 MobiDBLite consensus disorder prediction 625 649 - -
Lcy12g1541 733 Gene3D - 355 467 IPR015943 GO:0005515(InterPro)
Lcy12g1541 733 Gene3D - 263 336 IPR015943 GO:0005515(InterPro)
Lcy12g1541 733 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1541 Lcy-Chr12:35310825 Lcy1g1138 Lcy-Chr1:10633291 6.29E-95 dispersed
Lcy1g1442 Lcy-Chr1:14004427 Lcy12g1541 Lcy-Chr12:35310825 1.65E-91 transposed
Lcy9g1282 Lcy-Chr9:37515807 Lcy12g1541 Lcy-Chr12:35310825 4.63E-107 transposed
Lcy12g1541 Lcy-Chr12:35310825 Lcy3g0087 Lcy-Chr3:2251389 1.24E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34