Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1556 ATGAGTTATCATGGTGGAGATTCGTATACGCAGTCTTGTGTTTCGGCTCAAGGTTGTGGAAGAGATGATCTGTATATGGAGCTATGGAGGGCTTGTGCCGGTCCACTGGTTGATGTACCTCGCGTTGATGAGAGAGTCTTCTATTTCCCTCAGGGGCATATGGAACAATTAGAGGCATCGACGAATCTGGAGCTGAATAAGAGAATTCCTCTGTTTAATCTTTCCTCAAAGATTCTCTGTCGTGTGATTCATATTGAGCCGCTGGCAGATCATGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCGGAATCAAATCAAAATGAGCCTAAAAGTCTAGATCCATGCCCTCCTGAGCCAGCTAGACCAGTAGTTCATTCGTTCTGTAAGGTTTTAACTGCTTCTGATACCAGCACTCATGGTGGTTTTTCTGTCCTACGAAAACATGCTAATGAGTGCCTACCTCCTTTGGACATGACTCAAGCTACCCCAACTCAGGATCTGGTAGCCAAGGATCTCCATGGATATGAGTGGCGATTCAAGCATATTTTCAGAGGTCAGCCACGAAGGCACCTACTAACGACTGGATGGAGTACATTTGTTACTTCCAAACGATTATCTGCTGGAGATTCTTTTGTATTCTTGAGGGGAGACAATGGACAGTTGCGTGTTGGGGTGAGGCGTCGTGCTCGACAGCAAAGCAGCATGCCATCATCTGTGATATCGAGTCAGAGCATGCACCTAGGAGTGCTGGCAACTGCATCTCATGCTGTTACTACCCAAACCCGCTTTGTAGTCTATTATAAACCCAGGACTTGTCAGTACATAATAAGTCTGAATAAATACTTGGAAGCAGTCAATAACAGTTTTTCTGTTGGCATGAGATTCAACATGAGTTTTGAGGGAGAGGATTCTCCAGAGAGAAGGTTTTCAGGAACTATAATTGGAGCTGGAGATATTTCACCTCATTGGACTAATTCAAGCTGGAGATCACTAAGAGTTCAATGGGATGAGCAAACATCTATTCTAAGACCTGACAGGGTTTCACCTTGGGATATAGAACCACTCACGTCTTCAGCAGTCACAAATCTATCTCAACCTGTTTCAAAAAACAAAAGGCCTAGACAACCAACCGAAACTCCAGCTCTTGATGGTGCTGATTTGACTAAGCCAGCACATTGGGATTCTGGATTGGCACAGTCTCATGATGGTAAACAAAGCAGTAATGCAGCTGAAAGCAGAAAAGGTGAAAATAATGAATTGTGTCATCATAGAGAGACAGATACTATCAGCAACAGCACATGTGTATCAAGAACACCAACTGATGGGACCTGGTTATCTTCTACCCAATCCAATAGTTATAAACACCCGGCAAATGACATGGTGCAGGACTATAAAACTGTCCCTGGCTGTGGTTGGTCTTTTCTGTCAGGACCTTCACCCTCTCAATTGGTTAAGTTAAGTGATGATCAAACACTTGATCCCAATGAAAGTGGGAGGAAAGGCGAAACAGTAGCTAGTTGTAGATTGTTTGGTATTGACCTCAATCATTTGGCTAAACTTCCTGCTGAGAAAGCATCTTCTCAACCAAGCAGCGTGTCTAGCGACACAGACGGGCGCATCAGTACCTTGTCAGTGGCTCAGTCCGATCCAAAATCTGACAACTTGGAGGTTTCTGTAGAAAGAAAGTCAGAACCATTACAAGCATCTCTGAAGGAGACTCAGAGTAGCTTAACTAACACTAGAAGCCGCACCAAGGTTCACATGCATGGAATGGCCGTGGGTAGGGCAGTGGACTTAACCATCCTAGAAGGTTATGACCAACTAATAGATGAGCTTGAGAAGATGTTTGATGTCAGGGGACAGCTGTGTGCTCGAGATAAGTGGGAGATCGTATATACTGATGATGAAGGGGATATGATGCTTGTTGGAGATGACCCCTGGGAAGAATTTTGTAACATGGTGAGGAGAATTTTTATATGCTCTAGGGAGCAAGTGAAAAAGATGAGCTCAGGAAGCAAGCAGCTGACGTCAATAGAAGCTGAAGGGGCAGCAGTAATCCCGGACTCCCCTGCAATTTGA 2085 44.36 MSYHGGDSYTQSCVSAQGCGRDDLYMELWRACAGPLVDVPRVDERVFYFPQGHMEQLEASTNLELNKRIPLFNLSSKILCRVIHIEPLADHESDEVYAQITLMPESNQNEPKSLDPCPPEPARPVVHSFCKVLTASDTSTHGGFSVLRKHANECLPPLDMTQATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLRGDNGQLRVGVRRRARQQSSMPSSVISSQSMHLGVLATASHAVTTQTRFVVYYKPRTCQYIISLNKYLEAVNNSFSVGMRFNMSFEGEDSPERRFSGTIIGAGDISPHWTNSSWRSLRVQWDEQTSILRPDRVSPWDIEPLTSSAVTNLSQPVSKNKRPRQPTETPALDGADLTKPAHWDSGLAQSHDGKQSSNAAESRKGENNELCHHRETDTISNSTCVSRTPTDGTWLSSTQSNSYKHPANDMVQDYKTVPGCGWSFLSGPSPSQLVKLSDDQTLDPNESGRKGETVASCRLFGIDLNHLAKLPAEKASSQPSSVSSDTDGRISTLSVAQSDPKSDNLEVSVERKSEPLQASLKETQSSLTNTRSRTKVHMHGMAVGRAVDLTILEGYDQLIDELEKMFDVRGQLCARDKWEIVYTDDEGDMMLVGDDPWEEFCNMVRRIFICSREQVKKMSSGSKQLTSIEAEGAAVIPDSPAI 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35503175 35510832 + Maker00029310 Lcy12g1556 649619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1556 694 Gene3D - 126 231 IPR015300 -
Lcy12g1556 694 MobiDBLite consensus disorder prediction 523 582 - -
Lcy12g1556 694 FunFam Auxin response factor 127 231 - -
Lcy12g1556 694 Gene3D - 290 363 - -
Lcy12g1556 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 672 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy12g1556 694 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Lcy12g1556 694 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
Lcy12g1556 694 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Lcy12g1556 694 Gene3D - 579 671 - -
Lcy12g1556 694 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Lcy12g1556 694 MobiDBLite consensus disorder prediction 401 416 - -
Lcy12g1556 694 MobiDBLite consensus disorder prediction 363 377 - -
Lcy12g1556 694 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy12g1556 694 MobiDBLite consensus disorder prediction 363 426 - -
Lcy12g1556 694 FunFam Auxin response factor 290 361 - -
Lcy12g1556 694 Pfam AUX/IAA family 574 619 IPR033389 -
Lcy12g1556 694 Pfam AUX/IAA family 629 661 IPR033389 -
Lcy12g1556 694 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Lcy12g1556 694 ProSiteProfiles PB1 domain profile. 583 664 IPR053793 -
Lcy12g1556 694 MobiDBLite consensus disorder prediction 526 555 - -
Lcy12g1556 694 FunFam Auxin response factor 578 671 - -
Lcy12g1556 694 SUPERFAMILY CAD & PB1 domains 577 659 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1556 Lcy-Chr12:35503175 Lcy6g0783 Lcy-Chr6:7804027 1.96E-298 dispersed
Lcy9g1635 Lcy-Chr9:41505186 Lcy12g1556 Lcy-Chr12:35503175 1.62E-07 dispersed
Lcy12g1556 Lcy-Chr12:35503175 Lcy4g0845 Lcy-Chr4:11328680 9.34E-250 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19273 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1556 K14486 - csv:101209208 1251.88