Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1563 ATGGCTGGCTCCTGGAGGGCTCGAGGAGGGTCTTTGATCGTGCTGGCGATCGTTTTCTTCGGTAATATCGAGGAGTGTTTTGTTGATTTAAGACGGGGAAATGGTGGCTCCATGGATCTTGGATGCCTGTTCGCAATTTCCATCGCGAAAGAGGAAGCAACTAAATTAGGGACTGTCATTGGGATAGATTTGGGAACAACTTATTCGTGTGTTGGAGTCTACAAGAACGGTCATGTAGAAATTATAGCGAATGACCAAGGAAACCGTATCACCCCTTCTTGGGTCGCTTTCACTGATAGTGAGAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTCAACCCTGAAAGGACAGTCTTCGATGTCAAGAGACTTATCGGTAGAAAGTTTGATGATAAAGAGGTCCAGAAAGACATGAAGCTTGTTCCTTACAAGATTGTGAATAAGGATGGAAAGCCTTACATTCAAGTGAAGATCAAGGATGGTGAGACCAAGGTTTTTAGCCCTGAGGAAGTCAGTGCTATGGTTCTCACAAAGATGAAGGAAACAGCTGAAGCATTCCTTGGCAAGAAGATCAAGGATGCCGTCGTCACTGTTCCAGCTTACTTCAACGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGGATCATCAATGAGCCCACTGCGGCTGCCATTGCCTATGGTTTGGACAAGAAAGGTGGCGAGAAGAACATTCTTGTATTTGATCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGATAATGGTGTTTTTGAGGTTCTTGCCACAAACGGAGACACTCACTTGGGAGGTGAGGACTTTGACCAGAGAATTATGGAATACTTCATCAAATTGATCAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGAAGGGAATGTGAGCGCGCCAAGAGGGCATTGAGTAGCCAGCACCAGGTCCGCGTTGAGATTGAATCTCTCTTCGAGGGTACTGACTTCTCTGAGCCATTGACCAGAGCTCGATTTGAGGAGTTGAACAACGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAGGCCATGGAAGATGCAGGTTTGGAGAAGAACCAAATCGATGAGATTGTCCTTGTTGGTGGTAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAGGACTACTTTGAAGGCAAGGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCCTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGATATCCTTCTTCTTGATGTTGCCCCTCTTACCCTTGGAATTGAGACTGTTGGTGGAGTGATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACCAAGAAATCTCAGGTCTTCACCACTTACCAGGATCAGCAGACCACCGTTTCCATTCAGGTCTTCGAAGGTGAGAGGAGTCTCACTAAAGACTGCAGGAACCTTGGGAAATTCGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTCGATGCCAATGGTATCCTGAACGTTAAGGCCGAAGACAAGGGCACTGGTAAATCCGAGAAGATCACCATCACCAACGACAAGGGTCGATTGAGCCAGGAGGAGATTGACCGGATGGTTCGCGAAGCCGAGGAGTTCGCCGAGGAAGACAAGAAGGTGAAGGAGAGAATTGACGCCCGCAACAGCCTGGAAACCTACATCTACAACATGAAAAACCAGATCAATGACAAGGACAAGCTTGCTGACAAGCTTGAGTCTGATGAGAAGGACAAGATCGAGACAGCCGTTAAGGATGCTCTCGAATGGCTCGACGACAACCAGAGTGCCGAGAAGGAAGACTATGAGGAGAAGCTCAAGGAGGTTGAGGCCGTCTGCAACCCCATCATCACCGCTGTTTACCAGAGGTCTGGTGGCGCCCCCGGTGGCGAGCCGACCGAAGATGACGAGTCTCATGATGAGCTCTAA 2061 48.33 MAGSWRARGGSLIVLAIVFFGNIEECFVDLRRGNGGSMDLGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEVSAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFEGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYIYNMKNQINDKDKLADKLESDEKDKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGEPTEDDESHDEL 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35600808 35604925 + Maker00029422 Lcy12g1563 649626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1563 686 FunFam Heat shock protein 70 60 247 - -
Lcy12g1563 686 FunFam Luminal-binding protein 5 592 667 - -
Lcy12g1563 686 SUPERFAMILY Actin-like ATPase domain 244 435 IPR043129 -
Lcy12g1563 686 SUPERFAMILY Actin-like ATPase domain 57 241 IPR043129 -
Lcy12g1563 686 Coils Coil 636 656 - -
Lcy12g1563 686 FunFam Heat shock 70 kDa 438 592 - -
Lcy12g1563 686 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 590 673 IPR029048 -
Lcy12g1563 686 ProSitePatterns Heat shock hsp70 proteins family signature 2. 250 263 IPR018181 -
Lcy12g1563 686 Coils Coil 306 326 - -
Lcy12g1563 686 MobiDBLite consensus disorder prediction 665 686 - -
Lcy12g1563 686 FunFam Chaperone protein HscA homolog 248 296 - -
Lcy12g1563 686 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 439 596 IPR029047 -
Lcy12g1563 686 ProSitePatterns Heat shock hsp70 proteins family signature 3. 387 401 IPR018181 -
Lcy12g1563 686 Coils Coil 602 622 - -
Lcy12g1563 686 CDD HSPA5-like_NBD 57 431 IPR042050 -
Lcy12g1563 686 Gene3D - 242 416 - -
Lcy12g1563 686 PANTHER HSC70CB, ISOFORM G-RELATED 57 668 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
Lcy12g1563 686 Coils Coil 568 588 - -
Lcy12g1563 686 Gene3D - 60 431 - -
Lcy12g1563 686 FunFam Endoplasmic reticulum chaperone BiP 282 365 - -
Lcy12g1563 686 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Lcy12g1563 686 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 438 591 IPR029047 -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 108 116 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 416 436 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 256 266 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 196 216 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 86 98 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 443 462 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 524 540 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 58 71 - -
Lcy12g1563 686 PRINTS 70kDa heat shock protein signature 384 400 - -
Lcy12g1563 686 Gene3D Actin; Chain A, domain 4 282 365 - -
Lcy12g1563 686 Gene3D - 592 686 IPR029048 -
Lcy12g1563 686 Pfam Hsp70 protein 59 666 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1563 Lcy-Chr12:35600808 Lcy2g0193 Lcy-Chr2:1510056 4.15E-284 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1563 K09490 - csv:101207505 1267.68