Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1566 ATGGCGGAAGTTTTCGATGACGAAACCGAACAGACAATTTCCATTCAGGAGTATCTGAAGGAAGTTGAGGAACAGGAGCTGGAAGCGGATTTGGTTTTGGGAGGTGATGAAGGAAAGGAATGTACTTACAGCAAGGGTTATATGAAGAGACAAGCCATTTTCTCATGTCTAACTTGTACCCCTGATGGAAATGCTGGAGTTTGCACAGCATGTAGCTTGTCATGCCATGATGGACACGAGATTGTGGAATTATGGACCAAAAGGAACTTCAGGTGCGACTGTGGAAATTCAAAATTTGGAGATTTCATCTGCAAGCTATTCTCAAACAAAGATGTAGAAAATGCCAACAATTCGTATAATCATAATTTTAAAGGATCATACTGCATATGCAATCGCCCTTATCCTGATCCAGATGTTGAAGAGCAGGTGGAGATGATTCAGTGCTGTATGTGTGAGGATTGGTTCCATGAGGAACATCTTGGTCTCAATTCCATAGATGAGATTCCAAGAGATGAAGAAGGGGAGCCCCTGTATGAGGATTTCATATGCTCGGCATGTTCTGTGGTTTGTTCTTTTCTGAGTCATTATCCTTCTATTTGGGCTGTGGGAAGGCCCTCTGATATCCCCTCGGACGTTAGCACGAAAAATGATGCTCCAGAACTCAATCTTTCAGTTAGTATATCTGGAAAGCATGATGATGATGGCAATCCTTGTGATTCTGCCAATGTGGACCTTACAGTAGTTCCTGACAAATCTGCTGGCAAAGGCATCTCGCTTAGTGAACTTCCTGCCAACAATTCTACTTCTAATGAATCTACTAAAGATAACAATCAAACTGATAGTTGTGTGCTTGGCACTTCTCAGACATCTGCTTCCACAGTCATTGAAAACAAGCCAATGTTTCTTTCAAAGAATTGGAGGGGTGCCTTGTGCAGATGTGAAAAATGCATCAATAATTACAAGCTGAAGAATATCAGTTTCCTGCTAGATGAAGAGGACTCCATTGCTGAGTATGAGAAAATAGCAAAGCAGAAGAGGGAAGAGAAATTACAGCAACAAGAGGGTGCTGAGTTAAAGTTGTTTGATAACCTTGGCCATGTAGAGAAAATTGAGATTCTAAATGGCATTGCAGATATGAAGGATGAGATTCGTACATTCCTGGAATCGTTCGACTCATCGAAGCCTATTACATCTGCAGATATCCACCAGGTTTTCGAGAATCTAGCTAAAAAGAGGCGTCGTACTGAATGA 1251 41.57 MAEVFDDETEQTISIQEYLKEVEEQELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGDFICKLFSNKDVENANNSYNHNFKGSYCICNRPYPDPDVEEQVEMIQCCMCEDWFHEEHLGLNSIDEIPRDEEGEPLYEDFICSACSVVCSFLSHYPSIWAVGRPSDIPSDVSTKNDAPELNLSVSISGKHDDDGNPCDSANVDLTVVPDKSAGKGISLSELPANNSTSNESTKDNNQTDSCVLGTSQTSASTVIENKPMFLSKNWRGALCRCEKCINNYKLKNISFLLDEEDSIAEYEKIAKQKREEKLQQQEGAELKLFDNLGHVEKIEILNGIADMKDEIRTFLESFDSSKPITSADIHQVFENLAKKRRRTE 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35647973 35651228 + Maker00029215 Lcy12g1566 649629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1566 416 CDD PHD_UBR7 127 186 - -
Lcy12g1566 416 FunFam Putative E3 ubiquitin-protein ligase UBR7 122 189 - -
Lcy12g1566 416 SMART push_1 39 108 IPR003126 GO:0008270(InterPro)
Lcy12g1566 416 SUPERFAMILY FYVE/PHD zinc finger 115 196 IPR011011 -
Lcy12g1566 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 189 IPR013083 -
Lcy12g1566 416 Coils Coil 328 348 - -
Lcy12g1566 416 MobiDBLite consensus disorder prediction 254 283 - -
Lcy12g1566 416 CDD UBR-box_UBR7 40 107 IPR047506 -
Lcy12g1566 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 5 415 IPR040204 GO:0005737(PANTHER)|GO:0008270(InterPro)|GO:0061630(InterPro)
Lcy12g1566 416 MobiDBLite consensus disorder prediction 259 283 - -
Lcy12g1566 416 ProSiteProfiles Zinc finger UBR-type profile. 39 109 IPR003126 GO:0008270(InterPro)
Lcy12g1566 416 SMART PHD_3 127 187 IPR001965 -
Lcy12g1566 416 Pfam Putative zinc finger in N-recognin (UBR box) 41 105 IPR003126 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1566 K11979 - - csv:101208236 726.472
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g134 . . . . . . Bma07g01685 . . . Cma02g00914 Cma15g01281 Car02g00665 Car15g01155 . . Cpe05g00796 . . . . . . . . . . . . . . . Cone12ag0248 . . . Csa05g00199 Chy09g01298 . . Blo19g00368 . Bda09g00014 . . . . . Cmo02g00921 Cmo15g01350 . . . . . Cpe13g00108 Bhi12g00138 . . Lac11g1984 Hepe06g1474 . Lcy12g1566 Cla01g00182 Cam01g0186 Cec01g0183 Cco01g0186 Clacu01g0183 Cmu01g0179 Cre09g2326 Lsi09g00170 . . Cme09g01844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009471 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 0 1 3 1 1 33