Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1569 ATGGCGCCCCATCTTCCTCCCAGTATTCATTCTTCTTCATTTTCCCTCTTTCTCTTTCTCCTTACCATGCCATTGCTCCGACCCACCGCCGCCATGACCTTGCCGGAGGTCTTCTCCCCCCGGTTGCCCGATAGGGGTCCGGTTATTCCGGTCAGCAGTCTCGTCAAGTTCCTCGAGCGTCTTCAGGTTGTGGCGCTCGACTCCTTCGGTAAAGTGGATTTCGATCTTAAATACTATGTCGATTTGTCGCTGAAATTCGATTTGAATTCTACCGCGAGGGCGTTCGATGCCCTTGGGCGATCCTCCAATGGCTCTGTACCGGCGGAGGATTTGAAGGCGTTTATTAGAGAGTATTTCAATAGTGCTGGCACCGATTTGGTGTATTCCGACCCGGTGGATTTTCTCCCTCAGCCTGTGGGGTTTTTGCCGAAGGTGGAGAATGCGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTCTGGAAGAATCTTAGCCGGAGAGCCTCCGATGATCTCCTTCATCGGCCGGATACTCACACTCTGCTGCCGTTGCCGGAGCCCTGCGTCATTCCGGGTTCCAGATTCCGGGAAGTTTACTATTGGGATTCATATTGGATTATCAGAGGTTTGTTAGCAAGTAAAATGTATGAAACTGCAAAGGGAATTGTTATCAATCTCATTTCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCTAGAGTTTATTACACTAACAGAAGTCAGCCTCCCCTCTTGAGTTCCATGGTTTATGACATTTACCTTACGACACGGGATTTAGAGTTTGTGAGTAATGCACTCCCAGCTTTGATCAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCAATTACTGTCCAGAATGCTCCTGGTGGAAATCATTCTTTATCTAGGTACTATGCAATGTGGAACGAACCACGACCTGAATCTTCGCTGCTGGATGAGAAACTTGCCTCAAAGTTTGTAAGTAACTATGAAAAGCAGCAACTATACCGAGAGATCGCATCGGCCGCAGAATCTGGTTGGGATTTCAGTTCAAGATGGATGAGGGATCAGACGGACTTATCAACATTGGCTACAACTTCAATCTTGCCAGTTGATCTCAATGTATTCATACTCAAGATGGAACTTGACATTTCCAATCTGGCAAGAGCTGTTGGAGATTATGGCACTGCAGAGTACTTTTTGGAGGCTTCTCTAGTCAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTCGATAATGGCTCTTGCAAGGTTGCCCATACATGGGATGCTCGGAACCAGAATCAGAACATATATGCTTCAAACTTCATTCCTTTGTGGATCGAATCGTTCTACTCCGATAGCAGACAGATGAAGAAAGTCCTGAAAAGCTTACGGAACTCAGGCTTGCTGTGCAATGCTGGGATTGCAACTTCAACAATCAATTCAGGAGAACAATGGGATTTCCCGAACGGTTGGGCGCCGATTCAGCACATGATTGTCGAGGGACTGGTGAGATCCGAACTGAAAGAAGCAAGAGCATTGGCTAAGGATATCGCCGCGAGATGGCTCCGAACCAACTATGTAGCTTACAAGAAAACAGGATATATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGCAGGTGGTGAATATGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCTTTCCTTGAAGAGTTTGGATGGCCTGAAGATCAAAAGATAGATTGCTACTTAACTTCTTAA 1806 45.68 MAPHLPPSIHSSSFSLFLFLLTMPLLRPTAAMTLPEVFSPRLPDRGPVIPVSSLVKFLERLQVVALDSFGKVDFDLKYYVDLSLKFDLNSTARAFDALGRSSNGSVPAEDLKAFIREYFNSAGTDLVYSDPVDFLPQPVGFLPKVENAEVRAWALDIHNFWKNLSRRASDDLLHRPDTHTLLPLPEPCVIPGSRFREVYYWDSYWIIRGLLASKMYETAKGIVINLISMIDEFGHVLNGARVYYTNRSQPPLLSSMVYDIYLTTRDLEFVSNALPALIKEHKFWNSGFHSITVQNAPGGNHSLSRYYAMWNEPRPESSLLDEKLASKFVSNYEKQQLYREIASAAESGWDFSSRWMRDQTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYGTAEYFLEASLVRKKTINSIFWNSEKGQWLDYWLDNGSCKVAHTWDARNQNQNIYASNFIPLWIESFYSDSRQMKKVLKSLRNSGLLCNAGIATSTINSGEQWDFPNGWAPIQHMIVEGLVRSELKEARALAKDIAARWLRTNYVAYKKTGYMHEKYDVQKCGDFGAGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCYLTS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35705831 35710038 - Maker00029384 Lcy12g1569 649632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1569 601 PANTHER TREHALASE 61 597 IPR001661 GO:0004555(InterPro)|GO:0004555(PANTHER)|GO:0005991(InterPro)|GO:0005993(PANTHER)
Lcy12g1569 601 Pfam Trehalase 74 588 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 303 320 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 571 584 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 413 429 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 370 387 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 491 507 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 233 251 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 PRINTS Glycosyl hydrolase family 37 signature 338 355 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 ProSitePatterns Trehalase signature 2. 498 507 IPR018232 GO:0004555(InterPro)|GO:0005991(InterPro)
Lcy12g1569 601 Gene3D - 61 597 IPR012341 GO:0005975(InterPro)
Lcy12g1569 601 SUPERFAMILY Six-hairpin glycosidases 70 590 IPR008928 GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1569 K01194 - - csv:101208719 1053.51
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1569 . 44 596 Trehalose Biosynthesis Gene Families AT4G24040 57.1 2.2e-193 672.9
Lcy4g0684 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 77.8 0.0e+00 1385.2
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1224.9
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1150.2
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.2 0.0e+00 1136.7
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.7 0.0e+00 1110.9
Lcy2g0645 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.0 8.7e-302 1033.5
Lcy8g1559 . 28 739 Trehalose Biosynthesis Gene Families AT1G06410 50.3 1.7e-217 753.4
Lcy5g1792 . 83 736 Trehalose Biosynthesis Gene Families AT1G16980 59.8 2.1e-234 809.3
Lcy9g1399 . 85 550 Trehalose Biosynthesis Gene Families AT1G16980 63.0 6.2e-170 595.1
Lcy9g1400 . 28 236 Trehalose Biosynthesis Gene Families AT1G16980 52.6 6.2e-61 233.0
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1356.7
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1216.4
Lcy7g1119 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1118.2
Lcy6g2240 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.0 0.0e+00 1112.8
Lcy4g0684 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.9 0.0e+00 1101.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G23870 62.2 1.1e-294 1010.0
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1345.1
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1220.7
Lcy7g1119 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
Lcy6g2240 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.5 0.0e+00 1083.9
Lcy4g0684 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 1.9e-312 1068.9
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G60140 61.7 8.6e-289 990.3
Lcy7g1119 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1414.1
Lcy6g2240 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1270.4
Lcy4g0684 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1145.2
Lcy7g0196 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 64.4 0.0e+00 1127.5
Lcy2g0645 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1099.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G68020 65.1 7.5e-309 1057.0
Lcy7g0196 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1204.9
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 64.4 0.0e+00 1115.1
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.0 4.2e-293 1004.6
Lcy4g0684 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 57.7 7.9e-292 1000.3
Lcy6g2240 . 77 929 Trehalose Biosynthesis Gene Families AT1G70290 57.1 6.5e-286 980.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.7e-265 911.8
Lcy5g1792 . 1 970 Trehalose Biosynthesis Gene Families AT1G78580 70.4 0.0e+00 1347.8
Lcy9g1399 . 1 550 Trehalose Biosynthesis Gene Families AT1G78580 75.2 7.1e-228 788.1
Lcy9g1400 . 28 467 Trehalose Biosynthesis Gene Families AT1G78580 70.8 2.5e-188 656.8
Lcy7g0196 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 62.3 2.1e-311 1065.4
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.5 1.0e-297 1020.0
Lcy2g0645 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.5 1.7e-297 1019.2
Lcy4g0684 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.2 1.2e-290 996.5
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 8.6e-289 990.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.6e-271 932.9
Lcy6g2240 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1382.9
Lcy7g1119 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1265.4
Lcy4g0684 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.4 0.0e+00 1162.1
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 64.5 0.0e+00 1153.7
Lcy2g0645 . 1 851 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1096.6
Lcy1g0253 . 1 752 Trehalose Biosynthesis Gene Families AT4G17770 67.0 1.2e-311 1066.2
Lcy5g1792 . 87 964 Trehalose Biosynthesis Gene Families AT4G27550 56.8 1.5e-284 976.1
Lcy9g1399 . 93 550 Trehalose Biosynthesis Gene Families AT4G27550 61.1 1.8e-155 547.4
Lcy9g1400 . 28 465 Trehalose Biosynthesis Gene Families AT4G27550 55.4 1.6e-132 471.1
Lcy5g1792 . 1 970 Trehalose Biosynthesis Gene Families AT1G78580 70.4 0.0e+00 1347.8
Lcy9g1399 . 1 550 Trehalose Biosynthesis Gene Families AT1G78580 75.2 7.1e-228 788.1
Lcy9g1400 . 28 467 Trehalose Biosynthesis Gene Families AT1G78580 70.8 2.5e-188 656.8
Lcy5g1792 . 83 736 Trehalose Biosynthesis Gene Families AT1G16980 59.8 2.1e-234 809.3
Lcy9g1399 . 85 550 Trehalose Biosynthesis Gene Families AT1G16980 63.0 6.2e-170 595.1
Lcy9g1400 . 28 236 Trehalose Biosynthesis Gene Families AT1G16980 52.6 6.2e-61 233.0
Lcy5g1792 . 88 651 Trehalose Biosynthesis Gene Families AT1G17000 56.4 1.7e-182 637.1
Lcy9g1399 . 83 550 Trehalose Biosynthesis Gene Families AT1G17000 56.4 1.3e-142 504.6
Lcy5g1792 . 87 964 Trehalose Biosynthesis Gene Families AT4G27550 56.8 1.5e-284 976.1
Lcy9g1399 . 93 550 Trehalose Biosynthesis Gene Families AT4G27550 61.1 1.8e-155 547.4
Lcy9g1400 . 28 465 Trehalose Biosynthesis Gene Families AT4G27550 55.4 1.6e-132 471.1
Lcy6g2240 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1382.9
Lcy7g1119 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1265.4
Lcy4g0684 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.4 0.0e+00 1162.1
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 64.5 0.0e+00 1153.7
Lcy2g0645 . 1 851 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1096.6
Lcy1g0253 . 1 752 Trehalose Biosynthesis Gene Families AT4G17770 67.0 1.2e-311 1066.2
Lcy7g1119 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1414.1
Lcy6g2240 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1270.4
Lcy4g0684 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1145.2
Lcy7g0196 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 64.4 0.0e+00 1127.5
Lcy2g0645 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1099.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G68020 65.1 7.5e-309 1057.0
Lcy4g0684 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 77.8 0.0e+00 1385.2
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1224.9
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1150.2
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.2 0.0e+00 1136.7
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.7 0.0e+00 1110.9
Lcy2g0645 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.0 8.7e-302 1033.5
Lcy8g1559 . 28 739 Trehalose Biosynthesis Gene Families AT1G06410 50.3 1.7e-217 753.4
Lcy7g0196 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1204.9
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 64.4 0.0e+00 1115.1
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.0 4.2e-293 1004.6
Lcy4g0684 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 57.7 7.9e-292 1000.3
Lcy6g2240 . 77 929 Trehalose Biosynthesis Gene Families AT1G70290 57.1 6.5e-286 980.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.7e-265 911.8
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1356.7
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1216.4
Lcy7g1119 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1118.2
Lcy6g2240 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.0 0.0e+00 1112.8
Lcy4g0684 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.9 0.0e+00 1101.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G23870 62.2 1.1e-294 1010.0
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1345.1
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1220.7
Lcy7g1119 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
Lcy6g2240 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.5 0.0e+00 1083.9
Lcy4g0684 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 1.9e-312 1068.9
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G60140 61.7 8.6e-289 990.3
Lcy7g0196 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 62.3 2.1e-311 1065.4
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.5 1.0e-297 1020.0
Lcy2g0645 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.5 1.7e-297 1019.2
Lcy4g0684 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.2 1.2e-290 996.5
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 8.6e-289 990.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.6e-271 932.9
Lcy12g1569 . 44 596 Trehalose Biosynthesis Gene Families AT4G24040 57.1 2.2e-193 672.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38