Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1572 ATGGAAACGCTCACGAACAGAACCGATCTTCAGTTGTCGGATGTTTCGACGGCTCTTTCGAATCTGATTCTAACCGGCGGAGGAAATACTTTGGATTCGATCTTCTCTCACTGCGAGAATTCGAGCTTCGACGGCGGAGATTTCGAGCTGGCGGTCGGGTCGTCGGTCTATCTCCGGCAGCGGGAGGTGCTGCAGAGGTTTTCTCAGGACAGGAAAGCAAATGGGTCTCGGGATCTGTTTTCAAGGGCGTACGAGTTGCTGTATTCGGGCAGCGGGGCCGCCGTGGGCGGCGGCGAGAGGAAGCTTTACAGAGGAGTGCGGCAGAGGCAATGGGGGAAATGGGTGGCGGAGATTCGGCTGCCGCAGAATCGGATGAGGGTCTGGTTGGGGACCTACGACTCGCCGGAGGCTGCGGCCTATGCCTACGACTGCGCCGCCTGTAAGCTCCGGGGGGAATACGCTCGGCTGAACTTTCCGAATCTGAAGGATTTGAAGAGCGATTTGGGTTCCGGCGAGTTTGTGAAATTGAGTGGGTTGAAGAAATTGGTCGATGCGAAGATTCAAGCGATTTTTCAGAAAATTAAGGGGAAGGGGAAAAAGAGTGTGAAGAAGAAACAGAGGCCTGGTGGCGATTTGGGTTCGGGCTCGTGTTCTTCGTCTTCGTCATCGGTGTCTCTGCCGCCGGCGATGGTGGAGTTGACGGATGAGTGGAGTTGGGAAAGGGTGTCGCCGGCGGGGGCGGCGGCAGAAGAGGGGTTGTGGAGTTTTGAGGAGTCGCCTCGAGCTGTTTCTATGGATTGCTCGACGGTGACAGCGGCGGCGGGATCGGAAACAGAGTGCTACTCACTGGAGAAAATGCCTTCTTATGATGCGGAGCTGATATGGGAAGTTCTTGCAAATTAG 903 55.7 METLTNRTDLQLSDVSTALSNLILTGGGNTLDSIFSHCENSSFDGGDFELAVGSSVYLRQREVLQRFSQDRKANGSRDLFSRAYELLYSGSGAAVGGGERKLYRGVRQRQWGKWVAEIRLPQNRMRVWLGTYDSPEAAAYAYDCAACKLRGEYARLNFPNLKDLKSDLGSGEFVKLSGLKKLVDAKIQAIFQKIKGKGKKSVKKKQRPGGDLGSGSCSSSSSSVSLPPAMVELTDEWSWERVSPAGAAAEEGLWSFEESPRAVSMDCSTVTAAAGSETECYSLEKMPSYDAELIWEVLAN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35792480 35793382 + Maker00029423 Lcy12g1572 649635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1572 300 MobiDBLite consensus disorder prediction 212 227 - -
Lcy12g1572 300 CDD AP2 101 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 Gene3D AP2/ERF domain 102 160 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 MobiDBLite consensus disorder prediction 198 227 - -
Lcy12g1572 300 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 98 299 IPR051758 -
Lcy12g1572 300 Pfam AP2 domain 102 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 FunFam Ethylene-responsive transcription factor 2 101 160 - -
Lcy12g1572 300 PRINTS Ethylene responsive element binding protein signature 141 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 SMART rav1_2 102 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1572 300 SUPERFAMILY DNA-binding domain 102 159 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1572 Lcy-Chr12:35792480 Lcy13g1578 Lcy-Chr13:34614837 1.88E-33 dispersed
Lcy12g1645 Lcy-Chr12:36823624 Lcy12g1572 Lcy-Chr12:35792480 3.13E-57 transposed
Lcy4g1645 Lcy-Chr4:41509077 Lcy12g1572 Lcy-Chr12:35792480 3.16E-35 transposed
Lcy12g1572 Lcy-Chr12:35792480 Lcy13g0462 Lcy-Chr13:5524487 9.84E-25 wgd
Lcy12g1572 Lcy-Chr12:35792480 Lcy6g0809 Lcy-Chr6:8094494 6.61E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g126 Blo02g01147 . Bda06g00142 . Bpe05g00691 . . Bma14g00632 . Cmo16g00601 Cma02g00907 Cma15g01277 Car02g00657 Car15g01151 . . . . . . . . . . Cla07g01421 Cam07g1522 Cec07g1618 Cco07g1578 Clacu07g1510 Cmu07g1480 Cre07g1857 . . Cone6ag0849 Cone9ag0847 . Csa05g00207 Chy09g01291 . . . Bda07g00459 . . Bpe11g00636 Bma05g00873 . . Cmo02g00914 Cmo15g01346 . Cma16g00550 . . . . Bhi12g00150 . . . . . Lcy12g1572 Cla01g00191 Cam01g0196 Cec01g0190 Cco01g0196 Clacu01g0192 Cmu01g0188 Cre09g2319 Lsi09g00178 Csa04g00651 Chy07g01159 Cme09g01837
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011520 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19274 None None None None Lcy TF