Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1581 ATGCAGGGAATTCGTGCTCGGAGCAGGTTAGAGAGGATTATTGCTGTTCTGAAGTTCTCTAGAATTGAAAGAAAACTGTTTCTCAGTCTGGAGAGAATGGAAGAAATGAGCGAGGAAATGACGCTGTTGGATGCGACAGAGGATGCACATGTCCAAAATAAGGTTAGGCAAGAGGCTCAGGAGAATGAGTATTCACTGAAACCTGAAAATACCAACATGGTTGAATCACAAGAAATGCTTATACCCATTGACGGTGGCTATTCACAGGATTATCCTCATGAATTAACTGACATTTTAGAGGGTAAGAATCTGAATAGGTGTAAGAACAATGTGAAATTATCTGATCAACCAGAGTGCAGTCCTCACTGTATGGATGATGCTGGTGTAATGGTTGAAGAGCTAACTGTGAAAAATCACCACGGTTCCAATTTAGCAATTATTGGTCCATCAAACAATAGAGCACGACTGCTTTCTAGGCATAGTCAGTGGCAGCATTTTTACCAGCTAGCAAGTGGTTCAGGAAGTGGGAGTTCACGTTTAGATGCTTCTTACAAGAATATTGGTCAGGCAGTAATCACTGGCTTGGAGAATGGTGGGTACACATCTTTTCCTGAGTCTTTTGCTGGAAGGGCCAGTCGTAACGATTGTGGAGAGGAATTGGAAGAAATGAAGGCTATTGACAATAAGGGTGGTGATGCTCATGGCAGCATTCGGACCAAGATTCTATCCAAATCAGGTTTTCCTGAATTTTTTGTTAAAAATACCTTGAAAGGCAAGGGAATCATTCGTAGAGGTGTACCACTGGAGGGCTTTAATGTTGAACATAGGAACCCGAAGAATGCAAGGAATGCTGGGGGTATTACATTGGCATCTGACTCATCATTACAGCATGATGTCAAAACTGTCACGCCCTCTATGTATAGGAAATCTGAGCGTAAACTTCGGGGTTCTGCTTTAGATGGCATTAATCTGAGAGAATGGCTTAAAGTTCCCCACCGGAAAGTAAATAAAATTAAATGCTTGTATATATTTAGGCACATAGTTGAGCTGGTGGATCGTTCTCATGCTCGGGGGGTTTTGTTGCATGACTTACGTCCATCTTCTTTCAGGATATTGACGAAAAATCAGGTGAAGTACTTTGGATCTTTTATTCAAGGGAACGTGCCAGAAAATCCAATGGTTAAAGATGGTCAGGGTTTAGATAGCCGTCTGACTCGGAAAAGGCCATTAGAGCAAGGGAACTTTCTGTCACTTGGTGTATCTCCGAAAAAGCAAAAAGATGTCCAGAATACAAGTCTTATAGCCCGGCACTCTCATTTTCCTTTAAAATCTGGTGTCAATCTTGAAACTGCAAATACTAGGGACTGCAGTACGAATGGTTTGGAAAATTATAATGAACATTTTGCGGAACAGGGGGTTTGGAGCAAGCCTGATGGCCCTTGTGCATACGATTCTGCCCAGACTCCAATAAGTGACCAATTGGAAGAGAAGTGGTATGCAAGTCCAGAGGAACTTAATTCAGGATGCTGCTCAGCTAAATCAAATATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTGCTTGGAAAGTTTGAATCAGATGGCGCACGTGCTGCAGCGATGTCAAATTTGCGTGAGAGGATTCTTCCTCCTAACTTTCTAGCAGATAATTTAAAAGAAGTTGGGTTTTGTCTTTGGCTACTTCATCCTGAACCTGCATCTCGTCCGACAACAAGGGAAATTTTAGAATCAGAACTAATTAATGGAATGGCGAATTCTCCGCCAGCAGAGCTTTCAACAAATATTGACGAGGAAGATGCTGAATCAGAGTTATTAGTGCAGTTTCTCACATCATTGAATGAACAAAAGCAGAAACATGCCTCAAAGTTGGTGGAAGACATTCGGTATTTAGAATCTGACATTGAAGAAGTCAATAAAAGGCATAGTTCAGCCAAACTCTTGGATAAACCTGGCTTGTCTAATACCGTGGATGGAAGGGATGATTTGGCGTTTCATGGAGGATATCTAAATTCAGATGTGCGCCCTCAGGTATCTAGAATATCACATATCAATGAAGAGAGAATAGCAAAAAATATAAGTCAACTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTATATCCTTCTGAGAATGATTCGGCAATTCGGACAGATAAAGATTTATTGAGAACTCGTGAAAACTGCTATCTACCACAAAAAGATGATGAGGGGAGTCACGGTGATCGTTTAGGGGCCTTTTTTGATGGGTTTTGCAAGTATTCTCGTTATAGCAAGTTTGAAGTACGCGGGGTACTGAGAAATGGTGATTTTAACAGTTCATCGAATGTAATCTGTTCCTTGAGTTTTGATCGGGACGAGGATTATTTTGCTGCTGCTGGCGTGTCAAAGAAAATAAGGATTTTTGACTTTAATTCAGTCTTTAGTGACTCGGTAGATATTCACTATCCCGCAGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTGTTTGCTGGAATAGCTACATCAGGAACTATCTGGCTTCAACTGATTATGATGGTGTTGTTAAGGTATATTTCCTGCATGGTTATGAAACATGGAAATTCCAAAGACATGGCCTAGCAGGCACCATGTCTCTTTCTTGCTATGCCTTGATTACTGAGATTTTGTTGAATTTTAAGGCTGAAGTATTGTTACCTCATGGGCCGCCTAGATTTTATAGAAGTCTCTCGTTACTCTTTAGTGATTTAACTCTCTCGATTCTGAGCTAG 2766 40.71 MQGIRARSRLERIIAVLKFSRIERKLFLSLERMEEMSEEMTLLDATEDAHVQNKVRQEAQENEYSLKPENTNMVESQEMLIPIDGGYSQDYPHELTDILEGKNLNRCKNNVKLSDQPECSPHCMDDAGVMVEELTVKNHHGSNLAIIGPSNNRARLLSRHSQWQHFYQLASGSGSGSSRLDASYKNIGQAVITGLENGGYTSFPESFAGRASRNDCGEELEEMKAIDNKGGDAHGSIRTKILSKSGFPEFFVKNTLKGKGIIRRGVPLEGFNVEHRNPKNARNAGGITLASDSSLQHDVKTVTPSMYRKSERKLRGSALDGINLREWLKVPHRKVNKIKCLYIFRHIVELVDRSHARGVLLHDLRPSSFRILTKNQVKYFGSFIQGNVPENPMVKDGQGLDSRLTRKRPLEQGNFLSLGVSPKKQKDVQNTSLIARHSHFPLKSGVNLETANTRDCSTNGLENYNEHFAEQGVWSKPDGPCAYDSAQTPISDQLEEKWYASPEELNSGCCSAKSNIFSLGVLLFELLGKFESDGARAAAMSNLRERILPPNFLADNLKEVGFCLWLLHPEPASRPTTREILESELINGMANSPPAELSTNIDEEDAESELLVQFLTSLNEQKQKHASKLVEDIRYLESDIEEVNKRHSSAKLLDKPGLSNTVDGRDDLAFHGGYLNSDVRPQVSRISHINEERIAKNISQLESAYFSMRSKVYPSENDSAIRTDKDLLRTRENCYLPQKDDEGSHGDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFDFNSVFSDSVDIHYPAVEMFNRSKLSCVCWNSYIRNYLASTDYDGVVKVYFLHGYETWKFQRHGLAGTMSLSCYALITEILLNFKAEVLLPHGPPRFYRSLSLLFSDLTLSILS 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35902922 35908347 + Maker00029405 Lcy12g1581 649644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1581 921 ProSiteProfiles Protein kinase domain profile. 223 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1581 921 SUPERFAMILY Protein kinase-like (PK-like) 321 591 IPR011009 -
Lcy12g1581 921 Gene3D Transferase(Phosphotransferase) domain 1 321 593 - -
Lcy12g1581 921 SMART WD40_4 820 858 IPR001680 GO:0005515(InterPro)
Lcy12g1581 921 SMART WD40_4 764 808 IPR001680 GO:0005515(InterPro)
Lcy12g1581 921 Coils Coil 626 646 - -
Lcy12g1581 921 SUPERFAMILY WD40 repeat-like 768 863 IPR036322 GO:0005515(InterPro)
Lcy12g1581 921 Gene3D - 752 874 IPR015943 GO:0005515(InterPro)
Lcy12g1581 921 PANTHER PROTEIN SPA1-RELATED 2 40 856 IPR044630 GO:0009640(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1581 K16240 - - csv:101211350 1428.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1581 Lcy-Chr12:35902922 Lcy9g1298 Lcy-Chr9:37675340 3.65E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39