Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1588 ATGAATATGGATTTCGACTCTCTTTTTGGCCTCCCCGTTAAGTTTACCGAGCATCGTAACCATGTTAAGCTCGCTTCTGTGCCGGAAATCGCGCCCAGGCTTGTAAGGATTTCCGTCACCGACGCTGACGCCACCGATTCCTCCAGTGACGATGAGAACGAAATGTTTGGTCGCCACAGAGTCAAGAAATTTGTGAATGAGATTACGATCGAGCCGTCTTGTTCCGGCGAAGGGAATGGAATCTGGGGTGTCAACAGATCGGCGAGGACTAGCCGGAGACGGTCGCCGGGGAAATGTGGGGTTCCGTCAAGGAATCGTCGGTCGGTGAAGGTTCCGGACGGGAAGAAGTTCCGGGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCTCTCCGACGTGTACGGCTGTGGCTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTACGACAACGCCGCCATTCAACTCCGGGGACCCGATGCACTCACCAATTTCACCACCCAACCGACCAAAAAATGCTCCGGCTACAACTCTGGCGAGGAGTCGAACAACAACATTTGCTCTCCGACCTCTGTCCTCCGGTGTCCGTCGCCGCCAAACGAAGAGGCCCAATCCCAACTCCCCGGCGAGCCCGACATCTCTTGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGACACTTTCATTCCCCACGACATTTTCGCCTTCGAAGCTTCGATTCCGACCTTGTTCGACGACGAGCTGGGGCTGCAACATCAAACCAACTTTCTCGGCGACGACGGTTTCTTCAACGGCGTGTTCCACAGTACCGTCGAAGAAACCGGATCCGGATTCGGATACGGGTTCGGGTTCGAGTACCCGACTCCTCCTTCCGACGACTACTTTCAAGACTTCAGCGATGTGTTCGGTTCGGATCCTCTCGTCGCCCTTTGA 972 55.86 MNMDFDSLFGLPVKFTEHRNHVKLASVPEIAPRLVRISVTDADATDSSSDDENEMFGRHRVKKFVNEITIEPSCSGEGNGIWGVNRSARTSRRRSPGKCGVPSRNRRSVKVPDGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQPTKKCSGYNSGEESNNNICSPTSVLRCPSPPNEEAQSQLPGEPDISCVSENFSSEFSDFSSCSDTFIPHDIFAFEASIPTLFDDELGLQHQTNFLGDDGFFNGVFHSTVEETGSGFGYGFGFEYPTPPSDDYFQDFSDVFGSDPLVAL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35957022 35957993 - Maker00029338 Lcy12g1588 649651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1588 323 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 SMART rav1_2 116 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 Pfam AP2 domain 116 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Lcy12g1588 323 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677(InterPro)
Lcy12g1588 323 MobiDBLite consensus disorder prediction 85 110 - -
Lcy12g1588 323 CDD AP2 115 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1588 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 218 IPR050913 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2022 Lcy-Chr11:43777356 Lcy12g1588 Lcy-Chr12:35957022 1.39E-41 dispersed
Lcy12g0113 Lcy-Chr12:1444042 Lcy12g1588 Lcy-Chr12:35957022 1.24E-40 dispersed
Lcy12g1588 Lcy-Chr12:35957022 Lcy8g1682 Lcy-Chr8:43394661 4.20E-37 dispersed
Lcy12g1588 Lcy-Chr12:35957022 Lcy6g0824 Lcy-Chr6:8263700 7.50E-77 wgd
Lcy12g1588 Lcy-Chr12:35957022 Lcy6g0104 Lcy-Chr6:968938 1.84E-71 wgd
Lcy12g1588 Lcy-Chr12:35957022 Lcy6g2137 Lcy-Chr6:45213564 2.55E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19275 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1588 - - - 0.0