Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1590 ATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCATATGCAGGAGGAGTGTTTCTTGTGAACATTCATTTCCCTCCAGATTATCCATTTAAACCACCCAAGGTCTTCCATGGTAGTATTAATACATTGGACCATGTTTCAACTGGTTTGATTGAGCACAGTGTTGCATCCTTTATAGGGGCGGTTGAGGATTTGGACCACCTTTCTGAGAGTTGTGCTTTTTTCGCTTTGATTTGGGATCATTTTTTCGACCAGTCTTATCCGTCAAACACTCCTTTACCAAGGCTTTTTACCAAGGAGTTTGCTCTTATCCAGCACTCGAGGAATTTAACGAAATGGCTATGTCAGGGGCATGGCTCTGATACCACTTGTAAAGGACAAGGACACTACACAAATCTCCTTGTGGCTGATATTCATGGGAGGTTAATCGACAAACAAGTCCAAAATGAAGGAGTCCCAAAAGTAGGGAGAGCTGGAGAGATCAAGTTTTGGTCCGTTAATTCACAGATGGCACAATTATTTTTGCTTCAGAAAAGATGGAAATCTGGAGAACTTATCAAAATCCTTCCTGTTTTTGAGGTGGCTTCTGGCTTAAATGTAACACGGCATCTTCCACTAGGTTGA 720 43.61 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVFHGSINTLDHVSTGLIEHSVASFIGAVEDLDHLSESCAFFALIWDHFFDQSYPSNTPLPRLFTKEFALIQHSRNLTKWLCQGHGSDTTCKGQGHYTNLLVADIHGRLIDKQVQNEGVPKVGRAGEIKFWSVNSQMAQLFLLQKRWKSGELIKILPVFEVASGLNVTRHLPLG 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35981710 35986433 - Maker00029318 Lcy12g1590 649653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1590 239 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 151 IPR000608 -
Lcy12g1590 239 CDD UBCc 3 74 IPR000608 -
Lcy12g1590 239 SMART ubc_7 4 135 - -
Lcy12g1590 239 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 67 IPR050113 -
Lcy12g1590 239 SUPERFAMILY UBC-like 1 85 IPR016135 -
Lcy12g1590 239 Gene3D Ubiquitin Conjugating Enzyme 1 89 IPR016135 -
Lcy12g1590 239 Pfam Ubiquitin-conjugating enzyme 5 67 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1590 K06689 - - csv:101210687 150.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1590 Lcy-Chr12:35981710 Lcy8g1683 Lcy-Chr8:43397458 6.03E-43 dispersed
Lcy12g1590 Lcy-Chr12:35981710 Lcy6g0105 Lcy-Chr6:989119 2.63E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022801 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2