Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1591 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTTTCTTTCTGGGGTTGGTTTTTTCGCCGAGCAATGGCGACCCTGTTGAAGATAAGCAAGCTTTGCTTGATTTTGTGAAGAATCTCCCTCATTCTCGCTCTCTTAATTGGAATGCGGCCTCTCCGGTTTGCCATTACTGGACTGGTATAACTTGCAGTGAAGATGAATCTCGTGTTATAGCCGTTCGACTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAACACTCTCAGCCGGCTCTCGGCGTTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGAGTTCCCTTCTGATTTCAGAAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTTTGGAAGAATCTGACCTTTGTGAATCTCTCTAACAATGGCTTCAATGGCCGCATTCCTCCTTCGCTTTCTAATCTGACAGCCCTCACGGGTTTGAATCTGGCAAACAACTCTCTCTCAGGAGAAATACCTGACCTCCAAATGCCCAAATTGCAGGTTCTGAATTTCTCTAACAACAATTTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAGGTCTGTATTTGTAGGCAACGACGTATCCTTTGAGAGTTCTTTATCAAAAAATCCTCCCGTGCCCCCACCATTGCCCATGTCGAATGTGAAGCCAAAGAATGCTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATCATAATTGCTGGTGGTATTTTGGGGCTTTTAGCATTTGGCTTTCTGATACTTGTTTGCTGCTCAAGAAGAAAGAGTGAAGAATATTCCGGGGATCTGCAGAAAGGCGGAATGTCGCCCGAGAAGGTGATATCGAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGCCATTATGCTTTTGACTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGCTGAAGGATGTCAGCGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCATGAGAATGTGGTTGAGTTGAAGGCCTACTATTATTCCAAAGACGAGAAGCTGATGGTTTATGATTTTTATGGTCAGGGAAGCGTCTCGGCTATGTTACACGGTAAACGTGGAGAGGAGAAAACCCCGTTAGATTGGGACACGAGACTGAGAATTGCGGTCGGAGCAGCACGAGGAATCGCACGTGTCCATGGCGAGAATGGAGGGAAGCTGGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCGCTGTCTCCACCTATATCTCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGCAAGGCGACACAGGCTTCAGATGTTTTCAGCTTCGGTGTGGTACTCCTCGAACTTCTAACTGGAAAGTCTCCGATACACGCAACGGGGGGCGAGGAGATCGTCCACTTGGTAAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAAGTATTTGATGTAGAGCTGATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAGATAGCCTTATCATGTGTGGCCAGGATACCAGATCAGAGACCGAAAATGGAGGAAGTTGTGAAGATGATCGAAAGCGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGTACCGATCTGAAAGTCCAATGCCGCAAGCTGTTGGGACAGAAAATTCAACCTCTCAGTGA 1884 46.97 MEALWIFSFVFFLGLVFSPSNGDPVEDKQALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSEDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGEFPSDFRNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPPSLSNLTALTGLNLANNSLSGEIPDLQMPKLQVLNFSNNNLSGSVPKSLQRFPRSVFVGNDVSFESSLSKNPPVPPPLPMSNVKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCCSRRKSEEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFYGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHGENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMEEVVKMIESVRPMEAENRPSSTYRSESPMPQAVGTENSTSQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35990174 35994286 - Maker00029364 Lcy12g1591 649654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1591 627 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524(InterPro)
Lcy12g1591 627 SUPERFAMILY Protein kinase-like (PK-like) 329 593 IPR011009 -
Lcy12g1591 627 Gene3D Phosphorylase Kinase; domain 1 292 399 - -
Lcy12g1591 627 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Lcy12g1591 627 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Lcy12g1591 627 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lcy12g1591 627 Gene3D Ribonuclease Inhibitor 26 134 IPR032675 -
Lcy12g1591 627 MobiDBLite consensus disorder prediction 596 627 - -
Lcy12g1591 627 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1591 627 Gene3D Ribonuclease Inhibitor 135 227 IPR032675 -
Lcy12g1591 627 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 607 - -
Lcy12g1591 627 MobiDBLite consensus disorder prediction 601 627 - -
Lcy12g1591 627 Pfam Protein tyrosine and serine/threonine kinase 329 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1591 627 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Lcy12g1591 627 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Lcy12g1591 627 SUPERFAMILY L domain-like 37 208 - -
Lcy12g1591 627 PANTHER OS05G0588300 PROTEIN 8 606 IPR050994 -
Lcy12g1591 627 FunFam pollen receptor-like kinase 1 294 399 - -
Lcy12g1591 627 Gene3D Transferase(Phosphotransferase) domain 1 401 613 - -
Lcy12g1591 627 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0102 Lcy-Chr12:1336120 Lcy12g1591 Lcy-Chr12:35990174 1.79E-190 dispersed
Lcy12g1591 Lcy-Chr12:35990174 Lcy1g1630 Lcy-Chr1:16652898 1.14E-159 dispersed
Lcy12g1591 Lcy-Chr12:35990174 Lcy13g0438 Lcy-Chr13:5069737 2.21E-42 wgd
Lcy12g1591 Lcy-Chr12:35990174 Lcy6g0106 Lcy-Chr6:993662 1.71E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65528 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1591 - - - 0.0