Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1597 ATGGCGGCGAAAATTAGATCATTATTGTGTGTAATTGGTATAATGGTGTTGTGTTTGTTGGGCATTTCTGAATCGTTACCTCTGTCCACAAGAGGAAGATGGATCGTAGACGCTCTGACTGGCCAACGTGTGAAGCTGAGCTGCGTCAATCTGGTGTCCCATGCACAGTCCATGGTGGCACAAGGGCTGGACAAGCGTCCACTCAAGGAGTTGGCCGCTGAGATTAGCAGCCGCCAGTTCAATTGTGTGCGTCTCACGTGGTCCATCCACATGTTCACTCGTCACCCCTTGGAGACCATTGGTGAAGTCTTTGATCTCCTTGATATCTCCGATGTCAAAAGTGGAGTTCAGAAGCACAACCCTGAGATATTAAACATGACGGTTGTTCAGGCTTTTGAAACTGTCATCAATGGCTTGGGCTCGGAGGGTATTATGGTCATTTTGGACAACCACATCAGCCAACCCAGATGGTGTTGCTCTCTCAACGATGGAAATGGCTTCTTTGGTGACCGCAATTTCAACCCCTATGAATGGCTTAGAGGCTTGGCCTTTGTGGCTCGCCATTTCACTTATTGCAATCCCCATGTGATAGGAATGAGCCTAAGAAACGAGCTCCGAGGACCATTTACAAACACGGAGGTGTGGTACAAATACATATGGGAAGGAAGCCATCTGGTCCACAGAATAAACCCTAATCTCCTTGTAATCATCTCGGGTCTAAACTACGACAACGATCTAAGCCACCTGAAGAAAAGGCCACTAGACTACACCTTAAACAACAAAGTGGTCTTGGAGGCACATCTCTACTCCTTCAGTGGCGACCCAGAAAGCAAGTTCGTCAAGAAGCCATTGAACATAATATGCGACCAAATCATGGACAAGTTCGAAAGGGAAGCAGGCTTCGTAGTGGACATGGACAATAATCCATATCCATTGTTCCTCAGTGAATTTGGGTACGACCAATCCCGCGCCAACGAGGCCGAGAATCGATTCATGAGCTGCTTCTTGGCTCGCATTGCTGCCAAAGATATCGACTGGGCTCTCTGGGCTTTCCAAGGAAGCTACATGTACAGACAAGGCCGTGAAGATCCTGATGAAAGCTTTGGCGTTATGGATCATTCTTGGACTAAAGATCGAAACCCTAAACTCAGGCAAATGCTTCAGCTTGCCCAGAGAATTAACCAAGATCCAAATTCGAAAGCGCCGATGTCGTACATAATGCTCCATCCGGTGTCGGGCCAATGCGTCAAATCCGACGGCAAGGGAGGAATTCAACTCGGTGACTGCACGGCGCCGACCACCCAGTGGAGCCACAGCGGAGATGCAAGTCCGATGAAGTTGGTTTCCAATGGGCAGTGTTTGAAGTCGGCCGGAGATGGGAAACCACCGCTGGTGTCGGCCAACTGCTCCGCCGATGGGAGCACATGGACGGTGGCTTCGAGAGCCAAGCTTCAATTGGCCACCAAAATTGGTGGTGATAATTTTTGCTTGGAGAAGGATTCTGATACTTCCATTGTTGTGAAGAAATGCATTTGCCTTAAAGATGAGTGGAATTGCATGGATGATCCTCAGAGCCAATGGTTCAAGCTTGTTCCCACAAACGTTGCTTAG 1611 48.6 MAAKIRSLLCVIGIMVLCLLGISESLPLSTRGRWIVDALTGQRVKLSCVNLVSHAQSMVAQGLDKRPLKELAAEISSRQFNCVRLTWSIHMFTRHPLETIGEVFDLLDISDVKSGVQKHNPEILNMTVVQAFETVINGLGSEGIMVILDNHISQPRWCCSLNDGNGFFGDRNFNPYEWLRGLAFVARHFTYCNPHVIGMSLRNELRGPFTNTEVWYKYIWEGSHLVHRINPNLLVIISGLNYDNDLSHLKKRPLDYTLNNKVVLEAHLYSFSGDPESKFVKKPLNIICDQIMDKFEREAGFVVDMDNNPYPLFLSEFGYDQSRANEAENRFMSCFLARIAAKDIDWALWAFQGSYMYRQGREDPDESFGVMDHSWTKDRNPKLRQMLQLAQRINQDPNSKAPMSYIMLHPVSGQCVKSDGKGGIQLGDCTAPTTQWSHSGDASPMKLVSNGQCLKSAGDGKPPLVSANCSADGSTWTVASRAKLQLATKIGGDNFCLEKDSDTSIVVKKCICLKDEWNCMDDPQSQWFKLVPTNVA 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36148719 36150502 + Maker00029304 Lcy12g1597 649660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1597 536 SUPERFAMILY Ricin B-like lectins 402 529 IPR035992 -
Lcy12g1597 536 Gene3D Glycosidases 25 396 - -
Lcy12g1597 536 Pfam Cellulase (glycosyl hydrolase family 5) 65 352 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Lcy12g1597 536 SUPERFAMILY (Trans)glycosidases 26 390 IPR017853 -
Lcy12g1597 536 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 15 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1597 K01179 - - csv:101211910 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1597 Lcy-Chr12:36148719 Lcy12g1599 Lcy-Chr12:36157895 0 dispersed
Lcy12g1597 Lcy-Chr12:36148719 Lcy12g1598 Lcy-Chr12:36152353 1.03E-202 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g59 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0270 . . . . . Chy09g01270 . . . Bda07g00471 . . Bpe11g00649 . . . Cmo02g01448 . . . . . . . Bhi12g00175 . . . . . Lcy12g1597 Cla01g00215 Cam01g0222 Cec01g0213 Cco01g0221 Clacu01g0216 Cmu01g0210 Cre09g2298 Lsi09g00202 . . Cme09g01813
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241