Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1598 ATGGGAAGAACTTTTCCAGCTACTCTCTTTCTAGCATTAGTCTTTGTGTTTTCATCTCTTTCAACTCATTCACTTCCCTTGTCAACAAGAGGAAGATGGATCATCGATTCAAAAACAGGGAATCGAGTAAAGCTTGTGTGTGTGAATTGGCCTTCTCACACACAGAGCATGCTGATAGAAGGACTCAACCACAGGCCATTGAAAGAGCTTGCAGATGAGGCAGTCAAGTTGAGATTCAATTGTGTGCGACTCACATATGCAACCCATATGTTTACTCGCTATGCAAATAGGACAGTTCAAGAGAACTTCGACCTTCTCGATTTAGAACAAGCAAAAGCTGGATTGGCTCAGTATAATCCTTTTGTGCTGAACAAGACTATTGCTGAAGCCTATGAAGCTGTTGTTGATGTGCTTGGGGCGAGTGGTTTAATGGTAGTTGCTGACAACCATATGAGCCAGCCAAGATGGTGTTGCTCTCTTGACGATGGCAATGGTTTCTTTGGAGATCGCTATTTTGACCCTCAAGAATGGCTACAAGGTCTTAGCTTAGTTGCCCAACGCTTTATCAACAAACCAACTGTGGTGGCAATGAGCCTACGAAATGAGATACGAGGAACGATGGAAAATGCAATTGATTGGAACAAGTATGTAACTCAAGGAGTAACAACGATTCACAAGATTAACCCAGATGTTTTAGTGGTTGTTTCCGGCCTAAATTATGATAATGATCTTCGATGCCTAAAGGAGAAGCCTTTGACCGTAAACACCTTAGACAACAAGTTGGTTTACGAGGTGCACCTATATTCCTTCAGTGGAGATTCTGAGAGTAAATTTGTACAACAACCACTAAACAATATATGTGCTAATATTATCAATGGCTTCGTAGACCATGCTGGGTTTGTAATGGAAGGACCAAATCCATTTCCTTTGTTTGTCAGTGAATATGGGTATGATCAAAGAGAGGTTGACGAAGCAGAAAACCGATTCATGAGTTGCTTCATGGCTCATCTTGCACAAAAAGATTTGGATTGGGCATTGTGGACTTGGCAAGGTAGTTATTATTACAGGGAAGGTAATGCAGAGCCTGCAGAGACTTTTGGAGTTCTCGAATCTAACTGGACTCAAATTAAAAACCCTAACTTTGTCCAGAAGTTTCAACTGTTGCAGACCATGTTGCAAGATCCAAATTCCAATGCTTCATTCTCGTATGTTATATATCATCCACAAAGTGGCCGATGTGTCCATGTCTCCAACGACAACAAAGAAATTTTTCTCAACAATTGCTCTGCCTCAAGTCGATGGAGTCATGACAATGATAGCACTCCAATTAGGATGTCAAGCACTGGTCTATGCTTAAAGGCTAATGGAGAAGGCCTCGAGACATCTCTCTCAACTGACTGCTTAGGCAAACAGAGTGCTTGGACAGCCATTTCAAACACTAAGCTTCATTTGGCCACCTTCACTCAAGATGGAAAGAACCTTTGCTTACAGATTGCAAGTTCCAATTCTTCAAAAATTGTGACCAACCCTTGTATTTGTGCCAATGGCGAGCCAAATTGCCTCCAAGACACCCAAAGTCAATGGTTTGAACTTGTTGGAACCAACACACTCTGA 1614 41.82 MGRTFPATLFLALVFVFSSLSTHSLPLSTRGRWIIDSKTGNRVKLVCVNWPSHTQSMLIEGLNHRPLKELADEAVKLRFNCVRLTYATHMFTRYANRTVQENFDLLDLEQAKAGLAQYNPFVLNKTIAEAYEAVVDVLGASGLMVVADNHMSQPRWCCSLDDGNGFFGDRYFDPQEWLQGLSLVAQRFINKPTVVAMSLRNEIRGTMENAIDWNKYVTQGVTTIHKINPDVLVVVSGLNYDNDLRCLKEKPLTVNTLDNKLVYEVHLYSFSGDSESKFVQQPLNNICANIINGFVDHAGFVMEGPNPFPLFVSEYGYDQREVDEAENRFMSCFMAHLAQKDLDWALWTWQGSYYYREGNAEPAETFGVLESNWTQIKNPNFVQKFQLLQTMLQDPNSNASFSYVIYHPQSGRCVHVSNDNKEIFLNNCSASSRWSHDNDSTPIRMSSTGLCLKANGEGLETSLSTDCLGKQSAWTAISNTKLHLATFTQDGKNLCLQIASSNSSKIVTNPCICANGEPNCLQDTQSQWFELVGTNTL 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36152353 36154157 - Maker00029329 Lcy12g1598 649661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1598 537 SUPERFAMILY (Trans)glycosidases 25 386 IPR017853 -
Lcy12g1598 537 SUPERFAMILY Ricin B-like lectins 400 512 IPR035992 -
Lcy12g1598 537 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 9 533 - -
Lcy12g1598 537 Gene3D - 399 522 - -
Lcy12g1598 537 Pfam Cellulase (glycosyl hydrolase family 5) 64 350 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Lcy12g1598 537 Gene3D Glycosidases 27 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1598 K01179 - - csv:101207450 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0014 Lcy-Chr12:451382 Lcy12g1598 Lcy-Chr12:36152353 2.59E-216 dispersed
Lcy12g1327 Lcy-Chr12:29153237 Lcy12g1598 Lcy-Chr12:36152353 4.59E-295 dispersed
Lcy12g1598 Lcy-Chr12:36152353 Lcy8g0346 Lcy-Chr8:10590800 0 dispersed
Lcy12g1597 Lcy-Chr12:36148719 Lcy12g1598 Lcy-Chr12:36152353 1.03E-202 tandem
Lcy12g1598 Lcy-Chr12:36152353 Lcy12g1599 Lcy-Chr12:36157895 2.75E-200 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g57 . . . . . . . . . . Cma02g01417 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00230 Chy09g01269 . . . . . . . . . . Cmo02g01449 Cmo15g01324 . . . . . . Bhi12g00176 . . Lac11g2036 Hepe06g1504 . Lcy12g1598 Cla01g00217 Cam01g0224 Cec01g0215 Cco01g0223 Clacu01g0219 Cmu01g0212 Cre09g2296 Lsi09g00204 . . Cme09g01810
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241