Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1610 ATGGAGCCGGCGGGTTTATTCGAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTTTGGCGAGAATTCAAGTTGCGGTCCTCAATTTCCTCAGAATTCTCAGTTCCTCCACCCCTGCCATCTCAAATCTTCCTTTGATTGATCGAAGATCGAGCAACAGCCGAGTGAATCAAGGAATTTTGACGGACGTATCGTGGATTTTCCTTTCGCACTCCTTGTGTACGAGGTCTTTGATGAGAGCCAATGCTGCTAAGGCTTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGCTTCAGGAAAAGCGAGTGACGCAGAGGGAGCTGTTCTACAAGCTGCTCTGTGATTCACCTACTTATTTCCCGACTCAGTTGCATGTCAACAGGACAATTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGAATTATGGCATCTAGCAGGGGACTTGTCGCCGGCCGTCTATTGCTGCAGGCAGATTGCACTATCTTTAATATCGGTTTGGAGCCAGAGCAAGAAGTTGTGGATTGCGCTGCCTGTGGGTCTTCTGGATATCCCATTTCCGGTGATTTGGACCTGTTGCAGAAGTCGACTCTGAAGACTGACGCTCGGTACATAATTGTAATCGAAAAGCATGCGATATTCCAGCGGCTGGCAGAGGATCGCGTTTTCAATCACATACCCTGTATTCTCATCACAGCAAAAGGATATCCAGACATAGCCACACGGTATTTTCTTCACAGAATTAGCAAAACGTTTCCCCATCTGCCAATTTTCGGTCTTGTTGATTGGAACCCTGCTGGATTGGCTATATTATGTACCTTCAAGTATGGAAGCATTGGAATGGGCTTGGAGGCATACAGATACGCTTGCAATATTAAATGGTTAGGAGTGCGGGGAGACGATTTACAACTGATACCACAAGAATCTTTGGTTACACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGAGAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTGTACCACAATGGATTTGATTATTTGGAGAAATACATAGTCAAAAAGATCATCCAATTTAATTACATCTGA 1185 45.06 MEPAGLFESSMRFFSDQELCYADILTPQEVLARIQVAVLNFLRILSSSTPAISNLPLIDRRSSNSRVNQGILTDVSWIFLSHSLCTRSLMRANAAKAFVRVWKLMEMCSQILLQEKRVTQRELFYKLLCDSPTYFPTQLHVNRTIQDVVALLRCSRYSLGIMASSRGLVAGRLLLQADCTIFNIGLEPEQEVVDCAACGSSGYPISGDLDLLQKSTLKTDARYIIVIEKHAIFQRLAEDRVFNHIPCILITAKGYPDIATRYFLHRISKTFPHLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNIKWLGVRGDDLQLIPQESLVTLKPRDLQIAKSLMSSEILQENYREELTLMVERGQKAELEALYHNGFDYLEKYIVKKIIQFNYI 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36333496 36335867 + Maker00029173 Lcy12g1610 649673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1610 394 Pfam Topoisomerase 6 subunit A/Spo11, Toprim domain 223 388 IPR034136 -
Lcy12g1610 394 CDD TOPRIM_TopoIIB_SPO 222 379 IPR034136 -
Lcy12g1610 394 SUPERFAMILY DNA topoisomerase IV, alpha subunit 95 394 IPR036078 GO:0003677(InterPro)|GO:0005694(InterPro)
Lcy12g1610 394 PRINTS DNA topoisomerase VI subunit A family signature 138 155 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Lcy12g1610 394 PRINTS DNA topoisomerase VI subunit A family signature 248 269 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Lcy12g1610 394 PRINTS DNA topoisomerase VI subunit A family signature 281 297 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Lcy12g1610 394 PRINTS DNA topoisomerase VI subunit A family signature 156 171 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Lcy12g1610 394 PRINTS DNA topoisomerase VI subunit A family signature 224 241 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Lcy12g1610 394 Pfam Type IIB DNA topoisomerase 97 161 IPR013049 GO:0003677(InterPro)|GO:0003824(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006259(InterPro)
Lcy12g1610 394 FunFam Meiotic recombination protein SPO11-2 20 164 - -
Lcy12g1610 394 Gene3D - 165 394 - -
Lcy12g1610 394 PRINTS SPO11 homologue signature 85 101 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Lcy12g1610 394 PRINTS SPO11 homologue signature 286 305 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Lcy12g1610 394 PRINTS SPO11 homologue signature 238 253 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Lcy12g1610 394 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 27 390 IPR002815 GO:0000228(PANTHER)|GO:0000706(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)|GO:0007131(PANTHER)|GO:0042138(PANTHER)
Lcy12g1610 394 Gene3D - 18 164 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1610 K10878 - - csv:101213596 701.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1610 Lcy-Chr12:36333496 Lcy1g1396 Lcy-Chr1:13543675 5.62E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g44 . . . . . . . Bma14g00597 . . Cma02g01424 . Car02g01193 . . . Cpe05g00362 . . . . . . . . . . . . . . Cone8ag0276 . . . . Csa05g00240 . . . . . . . Bpe11g00672 . . . Cmo02g01458 . . . . . . . Bhi12g00322 . . . . . Lcy12g1610 . . . . . . . . . . Cme09g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39