Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1620 ATGGCCACTAAAGAGTCCAGTTCTGCCACTGCCACTGAGGGCAAGATTAAAGGGGCTCTCACCCATGGCGGCCGATACGTGCAGTATAATGTCTACGGTAACTTGTTTGAGGTTTCGGCCAAGTATGTTCCTCCTTTGCGACCCATTGGTAGAGGGGCTTATGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACTCATGAGGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCCAAGAGGACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCCATCAGAGACATCATACGACCACCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACGGACGATCATTGCCAGTACTTTTTGTATCAGTTATTGCGTGGGCTGAAATATGTACATTCAGCCAAGGTCTTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTCAAAATTGGAGACTTCGGATTGGCAAGGACGACCTCTGAAACTGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCTCCGGAGTTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATTGATGTTTGGTCTGTTGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGAAAAGATTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGGTCGCCAGACGATGCCAGCCTAGGATTTCTCCGAAGCGATAATGCCCGAAGATATGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAACTAGATTTCCCAACATGTCTCCAGCTGCCCTGGATCTTCTAGAAAAGATGCTCGTATTCGATCCCAACAAACGCATCACAGTTGAGGAGGCACTCTGTCATCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCGGTCTGTGCCAGACCTTTCAATTTTGATTTCGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATCTGGAAAGAATCCGTCAGGTTCAATCCCGATGAATCAGCCAGGAGGACGACTCTTTGCGTTTGA 1152 44.88 MATKESSSATATEGKIKGALTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSTRFPNMSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36495400 36500267 + Maker00029284 Lcy12g1620 649683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1620 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Lcy12g1620 383 FunFam Mitogen-activated protein kinase 127 356 - -
Lcy12g1620 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 365 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy12g1620 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1620 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1620 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524(InterPro)
Lcy12g1620 383 CDD STKc_TEY_MAPK 36 372 - -
Lcy12g1620 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Lcy12g1620 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Lcy12g1620 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1620 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1620 383 SMART serkin_6 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1620 383 FunFam Mitogen-activated protein kinase 28 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0267 Lcy-Chr11:3913183 Lcy12g1620 Lcy-Chr12:36495400 6.80E-211 dispersed
Lcy12g1620 Lcy-Chr12:36495400 Lcy13g1675 Lcy-Chr13:35711936 6.35E-192 dispersed
Lcy12g1620 Lcy-Chr12:36495400 Lcy13g0741 Lcy-Chr13:11249957 6.10E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65529 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1620 K20600 - csv:101214254 777.319