Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1621 ATGGCGACCGAGATCTCGGCCGTTGCAGCCGCCGCCACGTACCGGTTTAATCACGCGAGACAGATCTTCCCGGCGGCGGCGCCGAAACAGAGGGTGGCCGGAGCCCCACGTCTGGTTTTTTGGAATCGGTTTCCATGGCGGTGCTTTTCGAAACAGAGCTCGAGAAGATCGTTGGCCGTGAAGAAGAAAGGTAGGGAAGATGAAGTTGGTGAAGTCGAAATGGTGAAGGGATTGAAGCTGAATGTGGAGGAGAAAATGGCGAGGAAGAAAGCCGAAAGAGATGCTTATCTTGTTGCTGCAATTGTTTCGAGCTTCGGGATCACGTCAATGGCTGCCATCGCTGTTTATTACAGATTCTCCTGGCAAATGGGGGACGGGGAGTTTCCATTTTTGGAAATGTTTGGCACTTTCGCACTCTCTGTGGGCGCTGCTGTGGGGATGGAGTTTTGGGCGAGATGGGCCCACAAAGAGCTTTGGCATGCTTCCTTATGGGAAATGCACGAGTCTCATCACAGGCCGAGGGATGGACCGTTTGAATTGAACGATGTGTTTGCAATTATCAACGCTTTGCCTGCTATTGCCCTTCTTTCATTTGGCTTCTTCAATAAAGGCTTCTTTCCTGGCCTCTGTTTTGGTGCTGGTTTGGGAATTACGGTGTTTGGGATGGCCTACATGTTCGTCCACGATGGCCTCGTGCACCGTCGTTTCCCAGTGGGTCCCATAGCTGCTGTCCCCTATTTACGACGTGTCGCTGCTGCTCATCATGAATTGGAAGAAGTGGACGGCGAGGAAGAGCTGCAGAAGGAAATTAAAAAGAGAAGCAAGGTTTACAGAAGTTAA 840 51.19 MATEISAVAAAATYRFNHARQIFPAAAPKQRVAGAPRLVFWNRFPWRCFSKQSSRRSLAVKKKGREDEVGEVEMVKGLKLNVEEKMARKKAERDAYLVAAIVSSFGITSMAAIAVYYRFSWQMGDGEFPFLEMFGTFALSVGAAVGMEFWARWAHKELWHASLWEMHESHHRPRDGPFELNDVFAIINALPAIALLSFGFFNKGFFPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIAAVPYLRRVAAAHHELEEVDGEEELQKEIKKRSKVYRS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36508051 36511668 + Maker00029174 Lcy12g1621 649684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1621 279 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 48 260 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
Lcy12g1621 279 Pfam Fatty acid hydroxylase 143 256 IPR006694 GO:0005506(InterPro)|GO:0008610(InterPro)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1621 Lcy-Chr12:36508051 Lcy6g0134 Lcy-Chr6:1189443 2.53E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1621 K15746 - csv:101214325 369.007