Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1625 ATGGCTCGAGAGCTTTGTGAAGGCGAGGAGAAATCAAACGAGATGGAAACCGAAGGAGGAGGATTTTATTTCAGTTCGAATTCGAATTCGAACAGCCAATTCACGGGTCAGATCCAAGGCGGGTTTGGATCCGGGGAGATTTTCAGTTTGGGGAACAACGAGTCGAGCGGCGGCGGCGAGGAGTTTCATCCGAACATGATGGTGGTGGGGCCGTGGGGGACGGCGGCGCAAGAGAACAACCGATTCCATTTACTGGATGAGGATTCTTCTTTGAGATGTGTGTTTCCATGTGAGCCAAACGAGAGGCCAAGCCAAGGCCTTTCTTTGTCTCTCAGCTCCTCCAATCCTTGTTCTATCGGCTTACAATCTTTCGAACTCAGACCCCAACAACAAAATCAACAACAAAATCAACCATCGTCCTTTCCCATTTTCCAGCTTCGAAACTCGAGGTTCTTGGCCCCAGCTCAGGAGCTTCTTTACGAGTTTTGCAGCATCGGGATCACCAACAACAACAAAGCCCTCGATCGTTCCTCTTCACCAAAACAACACAAACCCAACAAACCCAAGCACTGGGAATTGGAAGACGGGTCTTCTTCCACCAAGCCGTCTCTTCAGTCCCTCGATTTCATGGAGTTGCAAAAGCGAAAAACCAAGCTCTTTTCCATGCTCGAGGAGGTTGAGAGAAGATACAGGCATTACTGCGAGCAAATGAAGGCGGTGGTGGCGGCGTTCGAGGCGGTGGCTGGGAGTGGCGCGGCGAGGGTGTACTCGGCGTTGGCTTCAAAGGCCATGTCGAGGCATTTCAGATGCCTGAAAGATGGAATCGTGGGGGAAATTCAGGCGACGAAGAAGGCAATGGGAGAGAAGGATCCGATTGCACCGGGAACCACCAGAGGAGAAACGCCGCGCCTGAGAGTCATCGATCAGGCTCTCAGGCAGCAGCGCGCCTTCCATCAAATCTCCATGATGGAAACTCATCCATGGCGCCCTCAGCGCGGCCTCCCCGAGCGTTCTGTTTCTGTTCTTCGCGCTTGGCTCTTCGAACACTTTCTTCACCCGTATCCTAGCGATGTCGATAAACATATTTTGGCTCGCCAAACTGGTCTCTCGAGAAGCCAGGCAAGTCCAAAAAATATCGTAGTGTCGAATTGGTTCATTAATGCGAGGGTGAGGCTGTGGAAGCCAATGGTGGAGGAGATGTATTTGGAGGAAACAAAGGAACGAGAAGAAGAGATTAACAACAACAACAACAATGGCAACAACTCTTCGGATGGTGTGGCGGACTTCGACGATGAAATCGACGGTCATCGATCGATCCCGACACGGTTGTTGGAGGATCAGAAGCCGACGCCGGACCAACTCCTGAGAATAGACTCGGAATGTCTCTCTTCGATCGTCTCCAATACCTCGGAGAAGAACGATTCGAGAACCATGAAATCCATGCAGAACCACCACCTCCACAACACCCACAGCCACGCCTTCGGGCGAGTCACTGCCGACGCGTTTGGCACGGTGGAGCTCGACTTCTCGTCCTACAACCACCACTCCAGTAGCGGTGGAGTTTCATACAACAACAACAGCAACAACAACAATCAACACTTCAACAACGGAAGCAGTGGCGGTGTATCGTTGACGTTAGGGTTACAGCAGCATGCAGCAGCCGGCGGGAACGGCGGCGGAGGGGTGAGCATCGCGTTCTCGCCGGCGGCAGCAGCACAAAGCTCCCTCTTCTTCACAAGAGATCACATGGAAGAATGCCAGCCAGTCCAATATTCTCTTTTAGATGGAGAAACTCAGAATCTTCCTTACAGAAACTTGATGGGCGCTCAATTGCTTCATGACTTGGCCGGATAA 1854 51.94 MARELCEGEEKSNEMETEGGGFYFSSNSNSNSQFTGQIQGGFGSGEIFSLGNNESSGGGEEFHPNMMVVGPWGTAAQENNRFHLLDEDSSLRCVFPCEPNERPSQGLSLSLSSSNPCSIGLQSFELRPQQQNQQQNQPSSFPIFQLRNSRFLAPAQELLYEFCSIGITNNNKALDRSSSPKQHKPNKPKHWELEDGSSSTKPSLQSLDFMELQKRKTKLFSMLEEVERRYRHYCEQMKAVVAAFEAVAGSGAARVYSALASKAMSRHFRCLKDGIVGEIQATKKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQASPKNIVVSNWFINARVRLWKPMVEEMYLEETKEREEEINNNNNNGNNSSDGVADFDDEIDGHRSIPTRLLEDQKPTPDQLLRIDSECLSSIVSNTSEKNDSRTMKSMQNHHLHNTHSHAFGRVTADAFGTVELDFSSYNHHSSSGGVSYNNNSNNNNQHFNNGSSGGVSLTLGLQQHAAAGGNGGGGVSIAFSPAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36543485 36547748 - Maker00029336 Lcy12g1625 649688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1625 617 MobiDBLite consensus disorder prediction 1 26 - -
Lcy12g1625 617 ProSiteProfiles 'Homeobox' domain profile. 325 395 IPR001356 GO:0003677(InterPro)
Lcy12g1625 617 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 422 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy12g1625 617 MobiDBLite consensus disorder prediction 173 202 - -
Lcy12g1625 617 CDD homeodomain 328 396 IPR001356 GO:0003677(InterPro)
Lcy12g1625 617 MobiDBLite consensus disorder prediction 1 16 - -
Lcy12g1625 617 SMART HOX_1 328 399 IPR001356 GO:0003677(InterPro)
Lcy12g1625 617 MobiDBLite consensus disorder prediction 177 196 - -
Lcy12g1625 617 SMART prehox3 140 277 IPR006563 -
Lcy12g1625 617 Coils Coil 209 229 - -
Lcy12g1625 617 Coils Coil 402 422 - -
Lcy12g1625 617 SUPERFAMILY Homeodomain-like 329 401 IPR009057 -
Lcy12g1625 617 MobiDBLite consensus disorder prediction 45 59 - -
Lcy12g1625 617 MobiDBLite consensus disorder prediction 45 64 - -
Lcy12g1625 617 Pfam Homeobox KN domain 345 391 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy12g1625 617 MobiDBLite consensus disorder prediction 515 538 - -
Lcy12g1625 617 Gene3D - 331 400 - -
Lcy12g1625 617 Pfam Associated with HOX 146 275 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1625 Lcy-Chr12:36543485 Lcy8g1151 Lcy-Chr8:37816424 1.96E-71 dispersed
Lcy12g1625 Lcy-Chr12:36543485 Lcy8g2020 Lcy-Chr8:46432224 5.09E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1625 - - - 0.0