Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g1628 | ATGGGCTTCCCTGCGAGCTACACCGAGCTTCTTCTTCCAAAGCTCTTCATCCATGTACTCTCCTTCCTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTGTTTCGCCTTCTAGGGCTCCAGGATTTCCTCGAACCGGACATTCCTTGGCCCAATCAGCCCGATTCCTTCCCCACCGGGCCGTTGACGGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGCGAGATTCTCCCCGTCGTGAAGTTTTCCGACCTTCTGGACCCGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGTTCGAGGCCGACGACGAGATCCGCCGCCTCGCGAACTGCCGCCACATCTTCCACCGCGGTTGCCTCGATCGGTGGATCGGTTACGGCCAGAGGACCTGCCCGCTCTGCCGGACGGTGTTCATTCCGGCCGATTTGCGGACTGGCGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTCGAAGCACTCCACACCGATTCTTCCTCTTCTTCGTCGTCTTCGTCGAATCTTCTCACCGCTGATGTTGATGGATTTGGAGGAATGGAGATGAATGTTCTTGGAGATAAGAAGATTGTTGAAGAGTGGGGCAATGTTTTTGTAGCTCTGCCTGTTTTAATCCAATTGGTGATTCGGGTTGAACCGAGTGGAACCGAGGCAGCCGGGGGCACTAGTGACCGAACGGAGGTGGAGGAGCTCGGCCGAGGCCGAGCAGGGGGTCAGGCCAAAATCCCGATCCCTTCGGCTTTGGCCTGTTCTTCCTCTGGGTTCCGTTTCCTGACTGTCTCCTTAGGTTGGTATCGTGTTGTCCTCATTCAATTCCTCGCATATCGGAGTGGTCCAAAATTACCTATAACAACAAGAATATTTGGAGTTGGGAGATTCGAAACTTTGACTTCTTAG | 921 | 54.94 | MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNQPDSFPTGPLTDLDPLSAAVLREILPVVKFSDLLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRTGGCNFDDRLWEDSEIFEALHTDSSSSSSSSSNLLTADVDGFGGMEMNVLGDKKIVEEWGNVFVALPVLIQLVIRVEPSGTEAAGGTSDRTEVEELGRGRAGGQAKIPIPSALACSSSGFRFLTVSLGWYRVVLIQFLAYRSGPKLPITTRIFGVGRFETLTS | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 36599203 | 36601218 | + | Maker00029226 | Lcy12g1628 | 649691 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g1628 | 306 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Lcy12g1628 | 306 | CDD | RING-H2_RHA1-like | 91 | 137 | - | - | |
| Lcy12g1628 | 306 | SUPERFAMILY | RING/U-box | 75 | 139 | - | - | |
| Lcy12g1628 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Lcy12g1628 | 306 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Lcy12g1628 | 306 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 169 | - | - | |
| Lcy12g1628 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Lcy12g1628 | 306 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g1325 | Lcy-Chr10:36122658 | Lcy12g1628 | Lcy-Chr12:36599203 | 6.21E-11 | dispersed | |
| Lcy12g1628 | Lcy-Chr12:36599203 | Lcy3g0490 | Lcy-Chr3:17846303 | 3.36E-17 | dispersed | |
| Lcy11g1395 | Lcy-Chr11:37735741 | Lcy12g1628 | Lcy-Chr12:36599203 | 7.77E-13 | transposed | |
| Lcy11g1983 | Lcy-Chr11:43425795 | Lcy12g1628 | Lcy-Chr12:36599203 | 2.85E-44 | wgd | |
| Lcy12g1628 | Lcy-Chr12:36599203 | Lcy13g0728 | Lcy-Chr13:10926394 | 8.81E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g1628 | K16281 | - | csv:101215533 | 318.546 |