Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1629 ATGTCTTCTGATCTGTTCGTCCATGGCGATTCTTCTTCTTCTTCTTCTCTGTTCCGCTGCTCCTCCTCCGATTTGGGCTTCCCTTCTGACGCTGAGCTCCAAATCTTCTGCGATCCTTATTCCCCTCATTTCTCCGATCCCGGCATTGATGTTCTTAATAATTTCTCCAATCTTTCCCCACTCGCCGATGAATCCAATTCCAATTCCAATTCCAATTCCAATTCTAATTCCAATTCCGCCGATCATTTCATTCCGATGCAGGCCTTATCCCTCTCTCACCGCAACGATTTCCATCTCCTTACCGATCCTTCCTCTTCCTCCTCAAATGCCTTTCAAAATCTCTCCAATTTTGACGTCAAAAACGAAGATTCCCATCTGGGTTTCACCTCTAATTCCTTCAATCAGCCGCTCGACCCACTCTGTTTCGACGCATCTGACAATAATGCCGCCATTGTAGACAAATCCTTGCTCCACAGAAGCTTCAGTGAAAAACCGGGCTTCCTCGGCTTCCAATCCCGCCTCGAATCTCTTCTAATGGAGTCCCCAAATTTCCCCAATCAGTCCCTCCCCTGCCCCGATTCCGACTTCTTCTCCTCCCAAATCCGTCGCGTCTTCAGCACCGGCGATTTACAGAATTCCGGCGTGGGACGGTCGAGCTCCGGGCAGGGGACGTTCTCGAGCCCGTTGTCGGAGAATGGAAGCTTGGAGGAGGCGAATTTCAAGGTTGGGCGGTACAGTGCAGAGGAAAGAAAAGAAAGGATTTCGAAATACAGAGCGAAACGAACGCAGAGGAATTTCAACAAGACGATCAAGTATGCATGTCGGAAAACGCTGGCCGACAACCGGCCGAGAATACGTGGCAGATTTGCACGCAATGATGAACCGGGAGAGATTCCCAAAGCTGCATGTTCAACCAGGGAAGAAGACGAAGATGATTTCTGGTTGGAAGGGTTGCATGCAGGAGGAGAAGAAGAAGGAAGAGTGAGAGGAAAGCAATATAATGAAGTGTACGGACGAATGCAATTTCAGTATTGTGGATTTTGA 1044 48.75 MSSDLFVHGDSSSSSSLFRCSSSDLGFPSDAELQIFCDPYSPHFSDPGIDVLNNFSNLSPLADESNSNSNSNSNSNSNSADHFIPMQALSLSHRNDFHLLTDPSSSSSNAFQNLSNFDVKNEDSHLGFTSNSFNQPLDPLCFDASDNNAAIVDKSLLHRSFSEKPGFLGFQSRLESLLMESPNFPNQSLPCPDSDFFSSQIRRVFSTGDLQNSGVGRSSSGQGTFSSPLSENGSLEEANFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWLEGLHAGGEEEGRVRGKQYNEVYGRMQFQYCGF 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36608515 36610272 + Maker00029327 Lcy12g1629 649692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1629 347 Pfam CCT motif 250 292 IPR010402 GO:0005515(InterPro)
Lcy12g1629 347 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 78 322 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lcy12g1629 347 MobiDBLite consensus disorder prediction 208 232 - -
Lcy12g1629 347 ProSiteProfiles CCT domain profile. 250 292 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1629 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0223 Lcy-Chr11:2882840 Lcy12g1629 Lcy-Chr12:36608515 3.12E-17 dispersed
Lcy12g0128 Lcy-Chr12:1595491 Lcy12g1629 Lcy-Chr12:36608515 8.69E-18 dispersed
Lcy12g1629 Lcy-Chr12:36608515 Lcy4g0787 Lcy-Chr4:9460109 1.59E-19 dispersed
Lcy12g1629 Lcy-Chr12:36608515 Lcy13g0408 Lcy-Chr13:4712109 1.57E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g20 . . . . . . . Bma14g00605 . . Cma02g01435 Cma15g01242 Car02g01204 Car15g01119 . . Cpe05g00352 . . . . . . . . . . . . . . Cone8ag0287 Cone12ag0293 Cone6ag0795 . . Csa05g00261 Chy09g01246 . . . . . . Bpe11g00662 . . . Cmo02g01470 Cmo15g01307 . . . . . Cpe13g00143 Bhi12g00289 . . Lac11g2068 Hepe06g1525 . Lcy12g1629 Cla01g00246 Cam01g0250 Cec01g0243 Cco01g0256 Clacu01g0248 Cmu01g0238 Cre09g2270 Lsi09g00236 . . Cme09g01781
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004602 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19277 None None None None Lcy TR