Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1631 ATGGGACATCACGAGAAGATCGGCGTTTATGTAAAGACATTGAACGTTTCAGGTGACAAAGGAAGACCAGGCAAAAGACCTAAATTCAGCAAGGAGGATTATAAGAAAGCTAATTTTGAAGAAAATGATGCCTATCATCTTGATGAGTTCGACGACGATGATCGTAATGGCAAATCTTCGTATATGTGTGATAAAGAAGGAGGTAACAGAGATTTTAGCAAATTAGAGTTAAAACCTGACCATGCTAATCGCCCTTTATGGGCTTGTGCTGATGGCCGCATATTCCTTGAAACTTTCTCGCCCTTGTACAAACAAGCTTATGATTTTCTTATTGCCATCGCCGAACCGGTTTGCAGGCCAGAATCAATGCACGAATACAACCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTTTGGAGACAGAGACAATTATCGCTGTTCTGAGTAAGTTGTCAAAGGCCAAGCTCCCTAAAGAGATGATTGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGAAGCTTGTGCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGCAAGTGCTCACCAAACGTGGTTCCTTGTGTTGCAGAAATTGCTCAAGGATGAGGTTATAGGCAGAGCTAGAATCATTCCCGAGGATTCTCGAGGAAATGGTGAATTTACAATTAGCAAAACAGCAGGTGAACTTGGCAGTCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCAGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCATCACAAGTTGAAAATGTTAAACAACGCTGCTTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAGCCACAGGCTCAACCACGGCCATATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGTGCTGGAAAGTCTCTGGTTGGTGTTTCTGCAGCCAGTCGTATCCGGAAAAGTTGTCTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGGGATGATCAAATTTGTCGTTTCACATCAGATAGTAAAGAAAGATTTCGAGGTAATGCCGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAGATAAGAAATAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGGAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGATGAAAGAATTACAGATTTAAATTTCCTTATTGGTCCCAAGTTGTATGAAGCGAACTGGTTGGACCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCCAATAAGTTCAGGGCATGCGAGTTTCTCATTCGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTCTTTGCTGACAATCTTTTTGCACTTACGGAATATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACTGTTTTTCTCTCAAAGGTGGGTGATAACTCTATCGATATTCCTGAGGCAAATGTGATCATTCAGATTTCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGGCGTATTCTTAGGGCTAAGGAAATGTACTATTCAACTAAAAGACAACAGTTTTTGATCGATCAAGGTTATAGTTTTAAGGTAATTACAAGCTTGCCACCAGCGGATGCAGGAGCTGATTTGAGCTACCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGCGATGATATGGTAGGATTGGAGCAATTAGAAGATGATGCAGACCAAATTGCACTCGATAAGGCTCGCCGCTCAATGGGATCCATGAGTGCAATGTCGGGAGCGAATGGAATGGTTTACATGGAGTACAGTACTGGACGAAAACTCGCTGGTCAAGGGCAGCTTAAGAGCAAGCCAAAAGACCCGGCAAAGAGACATCATCTGTTCAAAAAGCGATTCGCCTGA 2316 42.06 MGHHEKIGVYVKTLNVSGDKGRPGKRPKFSKEDYKKANFEENDAYHLDEFDDDDRNGKSSYMCDKEGGNRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEASAHQTWFLVLQKLLKDEVIGRARIIPEDSRGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKEMYYSTKRQQFLIDQGYSFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSMGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36641260 36649169 - Maker00029445 Lcy12g1631 649694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1631 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 484 IPR014001 -
Lcy12g1631 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 486 IPR027417 -
Lcy12g1631 771 CDD SF2_C_XPB 503 646 - -
Lcy12g1631 771 Pfam Type III restriction enzyme, res subunit 310 467 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Lcy12g1631 771 NCBIfam DNA repair helicase rad25 71 646 IPR001161 GO:0003678(InterPro)|GO:0006289(InterPro)|GO:0006367(InterPro)
Lcy12g1631 771 Gene3D - 301 492 IPR027417 -
Lcy12g1631 771 MobiDBLite consensus disorder prediction 748 771 - -
Lcy12g1631 771 FunFam Probable DNA repair helicase RAD25 301 492 - -
Lcy12g1631 771 PANTHER RAD25/XP-B DNA REPAIR HELICASE 66 740 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
Lcy12g1631 771 SMART ultradead3 307 488 IPR014001 -
Lcy12g1631 771 MobiDBLite consensus disorder prediction 757 771 - -
Lcy12g1631 771 CDD DEXHc_XPB 303 472 - -
Lcy12g1631 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 710 IPR001650 -
Lcy12g1631 771 SMART helicmild6 567 645 IPR001650 -
Lcy12g1631 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 706 IPR027417 -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 534 549 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 554 576 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 496 518 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 430 450 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 601 619 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 292 318 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 84 104 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 620 645 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 170 189 - -
Lcy12g1631 771 PRINTS Xeroderma pigmentosum group B protein signature 323 345 - -
Lcy12g1631 771 Pfam Helicase conserved C-terminal domain 86 194 IPR032830 -
Lcy12g1631 771 Pfam ERCC3/RAD25/XPB C-terminal helicase 492 646 IPR032438 -
Lcy12g1631 771 Gene3D - 493 706 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1631 K10843 - - csv:101215293 1385.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30