Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1632 ATGAGCGGGCACGACTCCAAGTATTTTTCCACCACCAAGAAGGGTGAAATTCCCGAGCTCAAGGAGGAGCTCAATTCCCAGTACAAGGCATTTCTCTCTCTCTGTACCCCTCTTTTACTTCAAATTTGTATTGCTAAGTCAATCTCTAGGTTTTCGTTTTTTGATCCGCGATCTATATCAATTCAGCTGACTGATAGTTCAGGTGTTTGGTTCTTTTTTGAATCGTTGTACTGTATGGGTAACTCGCAGATCTGTTGGGTTTGGGGTTTGCTATCTTTGTTGTCAAAGCTAGCGTTTGAATACCTTGAATTATGTCGTTCAGATAAGAGAAAAGATGCCGTTAAAAAGGTCATTGCTGCAATGACTGTTGGGAAGGATGTATCATCACTGTTCACAGACGTGGTAAACTGCATGCAGACTGAAAATTTAGAACTGAAAAAGTTGGTTTACTTGTATCTAATTAATTATGCCAAAAGCCAACCTGATCTAGCCATTCTTGCCGTGAACACATTTGTGAAAGATTCACAAGATCCAAATCCTTTAATTCGTGCTTTGGCCGTCAGGACAATGGGATGCATTCGTGTGGATAAAATTACAGAATACTTGTGTGATCCACTTCAGAGATGCCTTAAGGATGATGACCCTTATGTTCGCAAGACAGCTGCCATCTGTGTTGCCAAACTTTTTGATATAAATGCTGAGTTAGTTGAGGACAGAGGTTTTTTGGATTCTCTCAAAGACTTAATATCAGACAATAATCCAATGGTTGTTGCAAATGCTGTGGCTGCTCTTGCTGAGATACAGGAGAGTAGTAGCAGACCCATCTTTGACATTACAAGTCACACGCTGTCAAAACTTCTCACGGCTTTGAATGAGTGTACCGAGTGGGGTCAAGTTTTTATTCTGGATGCACTTTCTAGATACAAAGCAGAGGATGCTCGTGAAGCAGAAAATATAGTGGAGAGAGTTACTCCACGGCTACAACATGCTAATTGTGCAGTTGTTTTATCAGCTGTGAAGATGATTCTTCAACAAATGGAACTTATCAGTAGCACTGATGTAGTTCGAAATCTTTGCAAAAAGATGGCTCCTCCTCTTGTTACTTTGCTCTCAGCAGAACCTGAGATACAATATGTTGCATTGCGAAATATTAACCTTATAGTACAGAAACGACCTACTATTCTTGCACATGAAATTAAGGTTTTCTTCTGTAAGTACAATGATCCGATCTATGTAAAAATGGAGAAGTTAGAGATCATGATTAAGCTTGCATCTGACCGAAACATAGACCAGGTTCTGCTGGAGTTCAAAGAGTATGCCACTGAAGTAGATGTAGATTTTGTAAGAAAGGCTGTCCGTGCCATTGGTAGGTGTGCAATCAAGCTAGAGAGAGCTGCTGAACGATGCATAAGTGTGTTGCTCGAGCTGATCAAAATTAAAGTGAACTATGTGGTTCAAGAGGCTATTATAGTCATTAAGGATATTTTTAGAAGATATCCAAACACTTATGAGTCCATTATTGCTACACTCTGTGAAAGCTTAGACACATTGGATGAGCCAGAAGCCAAGGCATCAATGATCTGGATTATTGGAGAATATGCGGAGAGAATTGACAATGCAGATGAACTTCTTGAAAGCTTCTTGGAGAGTTTCCCCGAGGAACCTGCACAAGTCCAGCTACAATTGCTGACTGCAACTGTCAAACTTTTTCTCAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAGGCTGTTTTGAACAATGCTACTGTGGAGACAGACAATCCTGATTTGCGGGATCGTGCATATATCTATTGGCGACTCCTATCAACTGATCCAGAGGCAGCTAAGGATGTGGTTCTTGCCGAGAAGCCCGTAATTGGTGATGATTCGAATCTGCTTGATTCCTCACTCCTAGATGAGCTCCTTTCCAATATTGCCACTTTATCCTCTGTATATCACAAGCCTCCTGAAGCATTTGTGACCCGTGCAAAGACTGCTCAGAGAACCGAAGATGAAGATTTTCCCGAAGGAAGTGATGCAGGGTATTCAGAATCTCCTGCCCAGGCTGGTGGTGCATCGCCTCCAACTACTTCAGATGCACCTTATTCAGTATCAAAGAAACCAGCCGCCCCAGCTTCCCCTCCACCTCCAGCTTCAGTTCCGGATTTACTTGGTGACTTGATTGGACTGGATAACAGTGCTATTGTCCCTGTTGATGAGCCTGCTACTCCTGCTGGCCCTCCATTGCCTATTCTGCTACCAGCATCAGCTGGACAAGGCTTACAAATCAGTGCACAGCTCACACGACAGGATGGTCAAATATTTTACAGTTTATTGTTCGAGAACAATACTCAGATTACACTGGATGGGTTCATGATCCAGTTTAACAAGAATACCTTTGGTCTCGCAGCTGCAGGACCTTTACAGGTTCCACCGGTGCAACCTGGGTCCAGTGCAAGTACTCTCCTGCCCATGGTTGTGTTCCAAAATATGTCTCAAGGTCCCCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAGCAGCCAGTTTGGTACTTCAATGATAAAATCTCAATGCACATTTTCTTCACCGATGATGGGAGGATGGAACGTGCAAACTTTCTTGAGACTTGGAGGTCCCTCCCAGATTCAAATGAAGTTTCTAAAGACTTCCCCGCCATTGTTCTAACCAATGTCGAGGCTGTTCTGGAACGACTCGCTGCTACAAACATGTTCTTCATTGCGAAAAGGAAGCACGCAAGCCAGGACGTTTTCTACTTCTCTACTAGAATTCCCAGAGGAATCCCTTTCTTGGTTGAATTGACTACCGCTATCGGAAGCCCCGGACTGAAATGCGCCATCAAAACTCCAAACATTGACATGGCACCACTCTTCTTTGAAGCCTTGGAGATCCTTCTCAAGGAATGA 2934 43.18 MSGHDSKYFSTTKKGEIPELKEELNSQYKAFLSLCTPLLLQICIAKSISRFSFFDPRSISIQLTDSSGVWFFFESLYCMGNSQICWVWGLLSLLSKLAFEYLELCRSDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLDSLKDLISDNNPMVVANAVAALAEIQESSSRPIFDITSHTLSKLLTALNECTEWGQVFILDALSRYKAEDAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELISSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQAVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVIGDDSNLLDSSLLDELLSNIATLSSVYHKPPEAFVTRAKTAQRTEDEDFPEGSDAGYSESPAQAGGASPPTTSDAPYSVSKKPAAPASPPPPASVPDLLGDLIGLDNSAIVPVDEPATPAGPPLPILLPASAGQGLQISAQLTRQDGQIFYSLLFENNTQITLDGFMIQFNKNTFGLAAAGPLQVPPVQPGSSASTLLPMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHIFFTDDGRMERANFLETWRSLPDSNEVSKDFPAIVLTNVEAVLERLAATNMFFIAKRKHASQDVFYFSTRIPRGIPFLVELTTAIGSPGLKCAIKTPNIDMAPLFFEALEILLKE 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36655953 36663703 + Maker00029415 Lcy12g1632 649695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1632 977 Pfam Adaptin N terminal region 107 612 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Lcy12g1632 977 Gene3D - 861 977 IPR012295 -
Lcy12g1632 977 MobiDBLite consensus disorder prediction 690 704 - -
Lcy12g1632 977 SMART B2_adapt_app_C_2 865 976 IPR015151 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Lcy12g1632 977 Gene3D - 100 670 IPR011989 -
Lcy12g1632 977 Pfam Beta2-adaptin appendage, C-terminal sub-domain 867 975 IPR015151 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Lcy12g1632 977 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 107 935 IPR026739 GO:0016192(PANTHER)|GO:0016192(InterPro)
Lcy12g1632 977 SMART alpha_adaptinc2 742 856 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Lcy12g1632 977 MobiDBLite consensus disorder prediction 663 725 - -
Lcy12g1632 977 SUPERFAMILY ARM repeat 108 659 IPR016024 -
Lcy12g1632 977 PIRSF Beta_adaptin 1 31 IPR016342 GO:0015031(InterPro)|GO:0030276(InterPro)
Lcy12g1632 977 PIRSF Beta_adaptin 98 807 IPR016342 GO:0015031(InterPro)|GO:0030276(InterPro)
Lcy12g1632 977 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 864 976 IPR009028 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Lcy12g1632 977 SUPERFAMILY Clathrin adaptor appendage domain 748 862 IPR013041 -
Lcy12g1632 977 FunFam Beta-adaptin-like protein 861 976 - -
Lcy12g1632 977 FunFam Beta-adaptin-like protein C 749 859 - -
Lcy12g1632 977 FunFam AP complex subunit beta 95 670 - -
Lcy12g1632 977 Pfam Adaptin C-terminal domain 760 855 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Lcy12g1632 977 Gene3D - 747 859 IPR013037 GO:0006886(InterPro)|GO:0016192(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1632 K12392 - - csv:101215532 1558.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1632 Lcy-Chr12:36655953 Lcy4g0533 Lcy-Chr4:6441178 0 dispersed
Lcy12g1632 Lcy-Chr12:36655953 Lcy4g0526 Lcy-Chr4:6348626 6.44E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g18 . . . . . . . . . . Cma02g01437 Cma15g01240 Car02g01205 Car15g01117 . . Cpe05g00350 . . . . . . . . . . . . . . Cone8ag0289 Cone12ag0295 Cone6ag0794 . . Csa05g00264 Chy09g01244 . . Blo19g00330 . . . . . . . Cmo02g01471 Cmo15g01305 . . . . . Cpe13g00145 Bhi12g00287 . . Lac11g2070 Hepe06g1527 . Lcy12g1632 Cla01g00248 Cam01g0252 Cec01g0245 Cco01g0258 Clacu01g0250 Cmu01g0240 Cre09g2268 Lsi09g00238 . . Cme09g01779
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57