Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1636 ATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTCAAGAGACATGATGGACAAGCTGTTACATGTGAAGATTTCTATGCCGCAATGCGGGATGCAAATAATGCCGATTTTGCTAACTTCTTACTATGGTACTCTCAAGCTGGGACACCTCAAGTCAAAGTTACATCATCCTACAATTCCGATGGTCGGACCTTGACTCTGAAGTTCAGGCAAGATGTTCCACCAACTCCTGGGCAGCCAGCTAAAGAGCCAATGTTTATACCTGTTGCCCTTGGTTTGCTAGGCTCAGCTGGCAATAATTTGCCTCTGTCCTCTATATATCATGATGGGGTGTTGGAATCTATAACTGAAGATAATCAGCCAGTCTACTCCACAGTCCTCAGGTTGACCAAGAAAGAAGAAGAGTTTGTCTTCTCCGACGTACCTGAGCGGCCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTGTCCGCCTGGAAACAGATCTAAGTGACGATGATCTATTTTTCCTTCTTGCCCATGATTCAGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTGGCACGGAAATTAATGCTTCAATTGGTGGCTGATCACCAACAAAATAAACCATTGGTTCTTAACTCGAAGTTTGTGGAGGGTCTGAGATCCATACTTTCTGACTCAAGCTTGGATAAAGAATTCATTGCGAAAGCGATAACTCTCCCCGGCGAAGGGGAAATAATGGACATGATGGAGGTTGCAGATCCTGATGCTGTTCATGCTGTTCGAACTTTCATCAGAAAGCAACTGGCCAATGCATTGAAAGCAGAGTTTCTAACTGCGGTAGAAAACAATAAGAGTTCAGAAGCATATGTGTTTAACCATCCCGAAATGGCCAGGCGTGCTTTGAAGAATACTTCTCTCGCATATCTTGCATTAGTCGAGGATGCAGAGATTGCCAGTCTCGTGCTTCACGAGTATAAGAATGCCTCGAATATGACCGATCAATTTGCAGCTTTGGTGGCTATAGCTCAGAAGCCAGGTGAAACTCGTGATGAGATTCTTGCTGACTTCTATGCCAAGTGGCAGCACGACTATTTGGTTGTCAATAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGTAATATTGAGAATGTTCAGAACCTCCTAAATCACCCGGGATTCGACCTTCGAAATCCAAACAAGGTATATTCTTTGATTGGAGGTTTCTGTGGATCTATCGTCAACTTTCACGCAAAGGACGGATCGGGCTATAAGTTCTTGGGAGAAGTTGTCATGCAACTAGACAAGATCAATCCCCAGGTGGCCTCTCGAATGGTCTCTGCCTTCTCGAGATGGAGGCGTTACGACGAACAGCGACAAAGTCTTGCCAAGGCACAACTGGAGAAGATATTGTCTGCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCTTGA 1488 44.56 MYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYAAMRDANNADFANFLLWYSQAGTPQVKVTSSYNSDGRTLTLKFRQDVPPTPGQPAKEPMFIPVALGLLGSAGNNLPLSSIYHDGVLESITEDNQPVYSTVLRLTKKEEEFVFSDVPERPVPSLFRGYSAPVRLETDLSDDDLFFLLAHDSDEFNRWEAGQVLARKLMLQLVADHQQNKPLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKQLANALKAEFLTAVENNKSSEAYVFNHPEMARRALKNTSLAYLALVEDAEIASLVLHEYKNASNMTDQFAALVAIAQKPGETRDEILADFYAKWQHDYLVVNKWFALQAMSDIPGNIENVQNLLNHPGFDLRNPNKVYSLIGGFCGSIVNFHAKDGSGYKFLGEVVMQLDKINPQVASRMVSAFSRWRRYDEQRQSLAKAQLEKILSANGLSENVFEIASKSLAA 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36708892 36717239 + Maker00029273 Lcy12g1636 649699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1636 495 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 1 61 - -
Lcy12g1636 495 Gene3D - 55 168 IPR038438 -
Lcy12g1636 495 PANTHER PUROMYCIN-SENSITIVE AMINOPEPTIDASE 1 495 IPR012779 GO:0008270(InterPro)|GO:0009507(PANTHER)
Lcy12g1636 495 Gene3D Neutral Protease Domain 2 1 54 IPR027268 -
Lcy12g1636 495 FunFam Aminopeptidase N 55 169 - -
Lcy12g1636 495 FunFam Puromycin-sensitive aminopeptidase 170 494 - -
Lcy12g1636 495 Pfam Domain of unknown function (DUF3458) Ig-like fold 55 169 IPR035414 -
Lcy12g1636 495 Pfam Domain of unknown function (DUF3458_C) ARM repeats 172 494 IPR024601 -
Lcy12g1636 495 Gene3D - 170 494 IPR037144 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1636 K01256 - - csv:101216008 849.736
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42