Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1637 ATGTCGTCTTCTTCTTCTTCTTCTGCTGCGATTCGACCGCCATTATTAAGCCCTGAATCTAACATCATCGCCATTAATGTCGGTGGCCATCTCTTTCAAACCACCAAGCAAACCCTAGCCCTAGCCGGTTCCAAATCTCTGTTATCGACCATCTTCGATTCATCGCAATCTGTCTTGCCGTTTATCGATCGGGATCCCGATCTCTTTTCCCTCATCCTTTCGCTTCTCAGAACGGGTTATCTTCCCTCTAAAGCCAAGGCGTTTGATCTGCAAGACCTAATTTCAGAGTCGCAGTTCTACGGAATCGAATCGCTTTTGATTAATTCTTTGTCTAATCCTTCTCAATTCGAAGCTTTCAACCTCGAGAAATCGCTGATTTTGCCCCTCAATGGCCGAGACCCACCCTCGGCGATTACAACGACGCCGTTCGGATCGGTCCACGTCGCCAACGGCGGCAAGATCACCTCCTTCGATTGGTCGCTTCAGAGGAAGACGACGATTCTGACGCAATTCTCCGCCATTGATTCTCTTTTAGCCTTGTCGCCGTCGGTGGCCGCTGCCGGCGCCACCGACTTCTCCGGCCTGCAAATTCTCGATCTCGAAACCGGCCACGTGAGAACGATTCTCAATTGGGAGAACGTGACTCGATCAAGTTCCACCGTGCAAGCCATTGGAGCGTCCTCTCAATTTCTCTTCACCAGCTTCGAATCAGGCCGACGAAACTCAAATTCCATCATGATATACGACTTGCAAACCTTCAATCCCGTTACCGAAATCGCTCACAATGAGATCTACGGCGCCCAGATCGATTCGGCGATCCCAGCCACAATGTTGAAATGGGTTGCAGGTTATAATCTGTTAATGGCTTCTGGGTCTCACAGTGGGCCTTCTGGTGTACAGGGCAACATCAAATTCTGGGACATTAGAACAGGGAACACAGCTTGGGAGCTGAAGGAGAAGGTGGACTGTTTCTCAGACATAACAGTATCTGAGAATCTGTCAGCCATTTTCAAGATTGGTGTGAGCTCTGGTGAAGTTTACAGTGCAGATTTGAGAAAGCTTGGAGATGGGAATCCATGGATCTGCCTTGGGGACAGGATGAAGGTGGGGAATGGGAAGAAGGCAGGGGCTGGGGGGAAGATTGAGAGTTATGGAAATCAAGTGTTTTGTAGCAGAGAAGGAGGGAGCATAGAGTTATGGTCAGAAGTAACAGTTGGAAATGGAGGAAGCAAGGAAGGAGGATTAGGGTTAGGGTTAGAGGAGAGAGTTTTTAGGAAGAATTTGATGGGGAGAGTGAAGGATTTGGGAGGTGGGAGAGTGACCAATTTGGCATTTGGAGGGAATAAGATGTTTGTAACAAGAAAAGATCAGCAATCTGTGGAGGTTTGGCAGAGTTCAGCTAAGGGATTTTGA 1413 48.48 MSSSSSSSAAIRPPLLSPESNIIAINVGGHLFQTTKQTLALAGSKSLLSTIFDSSQSVLPFIDRDPDLFSLILSLLRTGYLPSKAKAFDLQDLISESQFYGIESLLINSLSNPSQFEAFNLEKSLILPLNGRDPPSAITTTPFGSVHVANGGKITSFDWSLQRKTTILTQFSAIDSLLALSPSVAAAGATDFSGLQILDLETGHVRTILNWENVTRSSSTVQAIGASSQFLFTSFESGRRNSNSIMIYDLQTFNPVTEIAHNEIYGAQIDSAIPATMLKWVAGYNLLMASGSHSGPSGVQGNIKFWDIRTGNTAWELKEKVDCFSDITVSENLSAIFKIGVSSGEVYSADLRKLGDGNPWICLGDRMKVGNGKKAGAGGKIESYGNQVFCSREGGSIELWSEVTVGNGGSKEGGLGLGLEERVFRKNLMGRVKDLGGGRVTNLAFGGNKMFVTRKDQQSVEVWQSSAKGF 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36724705 36726117 + Maker00029360 Lcy12g1637 649700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1637 470 Gene3D - 145 469 IPR015943 GO:0005515(InterPro)
Lcy12g1637 470 SUPERFAMILY POZ domain 20 108 IPR011333 -
Lcy12g1637 470 SMART BTB_4 21 117 IPR000210 GO:0005515(InterPro)
Lcy12g1637 470 Pfam BTB/POZ domain 23 108 IPR003131 GO:0051260(InterPro)
Lcy12g1637 470 CDD BTB_POZ_KCTD-like 23 100 - -
Lcy12g1637 470 Gene3D Potassium Channel Kv1.1; Chain A 16 113 IPR011333 -
Lcy12g1637 470 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 17 439 IPR045068 -
Lcy12g1637 470 SUPERFAMILY WD40 repeat-like 150 463 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1637 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1637 Lcy-Chr12:36724705 Lcy1g1553 Lcy-Chr1:15417723 1.47E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g304 . . . . . . . Bma14g00702 . . Cma02g01442 . Car02g01209 . . . Cpe05g00345 . . . . . . . . . . . . . . Cone8ag0294 Cone12ag0300 . . . Csa05g00270 Chy09g01239 . Blo03g00341 . Bda07g00482 . . . . . . Cmo02g01478 . . . . . . . Bhi12g00278 . . Lac11g2076 Hepe06g1534 . Lcy12g1637 Cla01g00253 Cam01g0259 Cec01g0251 Cco01g0264 Clacu01g0257 Cmu01g0246 Cre09g2263 Lsi09g00244 . . Cme09g01773
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010340 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32