Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g1638 | ATGGATGTGGCGGCGGTGGCGGTGGCGATCGCGGTCGTGACGACGACGACGACGGTGGCGTATTTGATTTGGTTCTTGAACATCAAACGGTCATTGAATGGGCCACGTGTCTGGCCTCTATTGGGCAGTCTTCCAGGACTGATTAAGAATAGTCACCGCATGCATGATTGGATCGTGGAGAATCTCCGGTCAACAGGTGGCACGTACCAAACTTGCACGTGTGCCGTTCCGTTCTTGGCCAAGAAGCAGGGTCTTGTGACGGTCACATGCGAGCCGAAGAATTTGGAGCATATTTTGAAGACCCAGTTCGAGAATTACCCGAAAGGACCCAATTGGCAGGCTGTGTTTCATGATTTGCTTGGTGATGGAATTTTTAACTCCGATGGCGATATATGGTTGTTCCAGCGTAAGACTGCTGCACTGGAATTTACCACTAGGACTCTTCGTCAAGCCATGGCTCGTTGGGTTAGTCGAGCTATTAAGTCTCGGTTTTGTCCGATTCTTGAGTCAGCTCAACGTCGAGCTCAGCCGGTTGACCTTCAGGACCTTTTGCTTCGACTGACATTTGATAATATTTGTGGATTGACTTTTGGTAAAGATCCCCAAACTCTCGCTCCTGACTTGCCCGAAAATGGCTTCGCTATGGCTTTTGATCGAGCCACCGAAGCCACATTGGGTCGCTTTATTTTGCCCAAATTCATATGGAAGTTGAAGAAATGGCTTCGACTCGGGATGGAAGTGACCTTAACCCACAGCCTCGAGCACACAGATCAATACTTAACCAACATCATCGAGACGCGAAAGCTTGAGCTATCCAATCAACACCAGAACGCCAATGGAACCCCTCACGACGACTTGTTATCAAGGTTCATGAAAAAGAAGGAATCCTACTCAGACACATTCCTCCAACACGTGGCGCTCAACTTCATCTTAGCTGGACGCGACACCTCATCCGTCGCGCTGAGCTGGTTCTTTTGGCTAGTCACCCAAAACCCAAGAGTGGAAGAGAAAATCCTCATCGAAATCTGCACCGTCCTAATGAAGACACGTGGCAAAGAGACCTCCACGTGGACCGAAGAGCCACTGAGCTTTGAAGAAGTGGACCAATTAATTTACCTCAAAGCCGCCTTGTCAGAAACTCTCCGACTCTACCCATCAGTGCCGCAAGATTCAAAACACGTAGTGAACGACGACGTTTTGCCCACCGGAGCTTTCGTTCCGGCCGGCTCTTCCATCACATATTCAATTTACTCCGTCGGCCGAATGAAGTTCATATGGGGAGAAGATTGCTTAGAATTCAAACCGGAGAGATGGCTGGCTTCAGATGGAAAGAAGAAATTTGAGCTTCAAAATGCTTATAAATTCGTTGCGTTTAATGCAGGCCCAAGAATATGTTTGGGAAAAGATTTGGCTTACTTGCAGATGAAGTCGATTGCGGCGGCGGTGTTGCTCCGGCACCGCCTGACGGTGGCGGCGGGCCACCGTGTGGAGCAGAAGATGTCGTTGACGTTGTTCATGAAACATGGGCTTAAAGTTCACTTGCATCCGAGAGATTTGGGCCGTGTGGTGGAGAAGATTAGCAGGACAGCGGCGGAGACGGTGGCAGTGGCGGCTGCTTGA | 1620 | 49.75 | MDVAAVAVAIAVVTTTTTVAYLIWFLNIKRSLNGPRVWPLLGSLPGLIKNSHRMHDWIVENLRSTGGTYQTCTCAVPFLAKKQGLVTVTCEPKNLEHILKTQFENYPKGPNWQAVFHDLLGDGIFNSDGDIWLFQRKTAALEFTTRTLRQAMARWVSRAIKSRFCPILESAQRRAQPVDLQDLLLRLTFDNICGLTFGKDPQTLAPDLPENGFAMAFDRATEATLGRFILPKFIWKLKKWLRLGMEVTLTHSLEHTDQYLTNIIETRKLELSNQHQNANGTPHDDLLSRFMKKKESYSDTFLQHVALNFILAGRDTSSVALSWFFWLVTQNPRVEEKILIEICTVLMKTRGKETSTWTEEPLSFEEVDQLIYLKAALSETLRLYPSVPQDSKHVVNDDVLPTGAFVPAGSSITYSIYSVGRMKFIWGEDCLEFKPERWLASDGKKKFELQNAYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAAGHRVEQKMSLTLFMKHGLKVHLHPRDLGRVVEKISRTAAETVAVAAA | 539 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 36741963 | 36743582 | + | Maker00029439 | Lcy12g1638 | 649701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g1638 | 539 | Gene3D | Cytochrome P450 | 27 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | E-class P450 group I signature | 321 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | E-class P450 group I signature | 301 | 318 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | Pfam | Cytochrome P450 | 34 | 508 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | CDD | CYP86A | 72 | 510 | - | - | |
| Lcy12g1638 | 539 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g1638 | 539 | FunFam | Cytochrome P450 | 26 | 520 | - | - | |
| Lcy12g1638 | 539 | SUPERFAMILY | Cytochrome P450 | 25 | 517 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PANTHER | CYTOCHROME P450 | 19 | 510 | - | - | |
| Lcy12g1638 | 539 | PRINTS | P450 superfamily signature | 312 | 329 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1638 | 539 | PRINTS | P450 superfamily signature | 375 | 386 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0415 | Lcy-Chr12:5066713 | Lcy12g1638 | Lcy-Chr12:36741963 | 1.82E-95 | dispersed | |
| Lcy12g1638 | Lcy-Chr12:36741963 | Lcy3g1870 | Lcy-Chr3:45893797 | 1.85E-158 | dispersed | |
| Lcy11g0110 | Lcy-Chr11:1201933 | Lcy12g1638 | Lcy-Chr12:36741963 | 3.79E-246 | transposed | |
| Lcy12g1638 | Lcy-Chr12:36741963 | Lcy13g0700 | Lcy-Chr13:10104949 | 2.33E-296 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g1638 | K15398 | - | csv:101216733 | 931.398 |