Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1639 ATGGAGGGCAAAGAAGAGGACGTGAAGCTGGGAGCCAACAAGTACTCAGAACGACAGCCAATCGGCACATCGGCGCAGACGGACAAGGACTACAAAGAGCCGCCGCCGGCGCCGCTCTTCGAGCCCGGCGAGCTCTCCTCATGGTCCTTTTACCGAGCCGGAATCGCCGAGTTCATTGCCACTTTCTTGTTCCTCTACATCACCATCTTGACGGTGATGGGCGTCAGCCGATCGCCGACCAAGTGCAACACCGTCGGCATTCAGGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATTAATCCGGCGGTGACGTTCGGGCTTTTCTTGGCGAGGAAGCTGTCGCTCACCAGAGCCGTATTCTACATCATAATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTCGTGAAGGGCTTTGAGAAGTCCATCTACGAGCAGAAGCTCGGCGGCGCCAACTTCGTCGCCTCCGGCTACACCAAGGGCAGCGGCCTCGGCGCCGAGATCGTTGGTACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGAATTAACCCGGCCAGGAGTCTTGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCATGTAAGTATAACTCTTACCCCTACCCCTGAAATCTTTAGGTGCTCCCAGTGCAATGTTACCGGTTGTTTTGCACCATTGGATTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTCTTGCTGCAATCTACCACCAGATCATCATCAGAGCCATTCCATTCAAGGCCAGAGCTTGA 942 56.9 MEGKEEDVKLGANKYSERQPIGTSAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITILTVMGVSRSPTKCNTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEKSIYEQKLGGANFVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHVSITLTPTPEIFRCSQCNVTGCFAPLDWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36747682 36749714 - Maker00029245 Lcy12g1639 649702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1639 313 CDD MIP 52 303 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 Pfam Major intrinsic protein 44 300 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 309 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lcy12g1639 313 NCBIfam MIP family channel protein 56 299 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 Gene3D Glycerol uptake facilitator protein. 37 311 IPR023271 -
Lcy12g1639 313 SUPERFAMILY Aquaporin-like 45 305 IPR023271 -
Lcy12g1639 313 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lcy12g1639 313 MobiDBLite consensus disorder prediction 1 34 - -
Lcy12g1639 313 FunFam Probable aquaporin PIP1-2 37 265 - -
Lcy12g1639 313 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1639 313 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1639 Lcy-Chr12:36747682 Lcy7g0971 Lcy-Chr7:9971044 7.88E-157 dispersed
Lcy12g1639 Lcy-Chr12:36747682 Lcy5g0125 Lcy-Chr5:1344583 8.67E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1639 K09872 - csv:101217440 539.65