Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1640 ATGGATTTGCAGAGGCATTTTCTTGATGGGTTTGCCATATCTGCTTTGGTTTTGCTGCTGATTTTTCCTTCTCACGTGATGGCTGGGGATATAGTTCATCATGACGATTTGACTCCCAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTAGTATCTCCAATGGCTGTTCCTTTCTTTCTTTTTGCTTCAGAGATTTGTTTTCATTTATTTGATCTCCATATCGTTAAAGTTCAAACTTGGATTGATGGCATAGAAGCTAGTGAATTTGTCGGCGTTGGTGCTAGATTTGGTGCTACTATTGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTAGTTCTTGCAAATCCCCGTGATTGTTGCAGCGTGCCGAAGAACAAGCTTTCTGGAGATATAATCATGGTCGATCGAGGTCACTGCAAATTTACTACAAAAGCAAATATAGCAGAAGCTGCTGGTGCTTCAGCTATACTCATAGTAAATAACCAGAAAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACGGATTTAGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGCACAAGCTTGGAGAAGATGCTAATAAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCATTACGACCGCCGGTTGACATAGCTGAAGTATTTTTATGGTTGATGGCTGTCGGTACGATCTTGTGCTCGTCTTTTTGGTCTGCCTGGAGTGCTAGGGAAGCAGCTATTGAGCAGGACAAGCTACTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGACATGGGCAGCCCTGGTGTTGTGTATATCAACATGGCATCAGCGGTTCTGTTTGTTGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATCGAGCTTTTGGTGGTCCTTTTCTGCATAGGAGGTGCAGAGGGCTTGCAAACTTGTTTGGTAGCTTTATTGTCAAGATGCTTTAAGCATGTTGGAGAATCATACATCAAAATGCCATTCTTTGGAGCTGTTTCATACCTCACTGTGGCTGTTTCCCCATTCTGCATAGCGTTTGCTGTTGTTTGGGCTGTTTATCGGAATGTGTCGTTTGCCTGGATCGGTCAAGACATACTTGTAAGAAAAGGGTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCGAATCTCAAGGTATCAATTTCGAACTATGTTCTATGTTTATGTATCTGAAGAACATGATGATTGTCTTGCATGTTTGCAAGGTTGGAACAGTGCTCCTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGATGGCATCCCGATGCTGCTAAAGATCCCGCGCATGTTCGATCCATGGGGTGGTTATAGTATTATCGGGTTCGGAGACATCCTTTTGCCTGGACTTGTAGTAGCATTTTCACTCAGGTATGACTGGTTGGCGAATAAGACCCTCCGGTTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATAACCTATGTGGCTTTGAACCTGATGGACGGCCACGGCCAGCCTGCGCTGCTTTACATCGTCCCGTTCACTCTTGGAACTCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAAAGGACCTGCCCTCATGCCCATCTTCTCATCAATGATGATTTAAATGAAGAAAAATGA 1797 43.41 MDLQRHFLDGFAISALVLLLIFPSHVMAGDIVHHDDLTPKKPGCENDFILVVSPMAVPFFLFASEICFHLFDLHIVKVQTWIDGIEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDMGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKHVGESYIKMPFFGAVSYLTVAVSPFCIAFAVVWAVYRNVSFAWIGQDILVRKGWNCTDNYSSSNSSYTESQGINFELCSMFMYLKNMMIVLHVCKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKTLRFGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRGDLGILWTKGEPERTCPHAHLLINDDLNEEK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36758193 36763706 - Maker00029482 Lcy12g1640 649703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1640 598 PANTHER SIGNAL PEPTIDE PEPTIDASE 118 576 IPR007369 GO:0005765(PANTHER)|GO:0016020(InterPro)|GO:0030660(PANTHER)|GO:0033619(PANTHER)|GO:0042500(PANTHER)|GO:0042500(InterPro)|GO:0071458(PANTHER)|GO:0071556(PANTHER)
Lcy12g1640 598 FunFam Signal peptide peptidase-like 3 75 214 - -
Lcy12g1640 598 Pfam PA domain 112 196 IPR003137 -
Lcy12g1640 598 SUPERFAMILY PA domain 120 168 IPR046450 -
Lcy12g1640 598 Pfam Signal peptide peptidase 273 381 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Lcy12g1640 598 Pfam Signal peptide peptidase 414 578 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Lcy12g1640 598 SMART psh_8 272 567 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Lcy12g1640 598 Gene3D - 80 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1640 K09597 - - csv:101216966 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1640 Lcy-Chr12:36758193 Lcy3g1169 Lcy-Chr3:36876134 6.33E-78 dispersed
Lcy13g0697 Lcy-Chr13:10055072 Lcy12g1640 Lcy-Chr12:36758193 5.36E-95 transposed
Lcy13g0698 Lcy-Chr13:10066033 Lcy12g1640 Lcy-Chr12:36758193 1.78E-77 transposed
Lcy12g1640 Lcy-Chr12:36758193 Lcy13g0696 Lcy-Chr13:10049926 3.63E-46 wgd
Lcy12g1640 Lcy-Chr12:36758193 Lcy6g0157 Lcy-Chr6:1474034 8.56E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g312 . . . . . . . . . . Cma02g01443 Cma15g01234 Car02g01211 Car15g01111 . . Cpe05g00343 . . . . . . . . . . . . . . Cone8ag0298 Cone12ag0304 . . . Csa05g00272 Chy09g01236 . . . . . . . . . . Cmo02g01479 Cmo15g01297 . . . . . Cpe13g00152 Bhi12g00274 . . Lac11g2079 Hepe06g1537 . Lcy12g1640 . . . . . . . Lsi09g00248 . . Cme09g01770
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002068 3 3 2 4 2 1 4 1 1 2 1 1 2 2 2 3 1 4 4 1 2 2 2 1 3 2 2 2 3 2 65