Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1641 ATGGCTTCAGCTTTCACTTTCCTTCCATTTCCCCTCATTCTCTCTCCTCGTCCCACTATTCCATCTCTAAGACCTCAATTTCACCGCCAGTATCTTCCCTCCATTCGAATTCTCCGACCTTCAGTTCCTTCCGCCATCGGGCCGGACGGAAAGTTCTATCCGGACCCGGCCGACGACGACCCACCGGAAGTTCCGGAGGATGCTGGCCATGGGGTTTCGAAGTTTCAGCAGATATACCGCCAAGCGGCTCGTGCGAGAAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACTTACCTGTCAGCCATTGCTGACGTCGAGGATGCACCTGAGAATGCTGAGTATTTGAATTCGGAGAGCAGTGGAGATGATTTGTTTGGTGAAATTGACAAAGCTATTGCTATGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTCAAGCCTAACCCGAAGAAAGAAAAGGCGGTTGAGAAAGATGATATTGAGGGCGTTGATGAGTTGGAGACTGAGGAGGTCGCTGATTTGGAGGAGATTAATGAGCTTCAGGGGCTTACAGTGATTTCGGAGGACGAGGATGAGAACGAGGACGAGGATGAAGATGGGCCTGGGAATTTGGATGACGATGTAAGTGAATTAGGTGGTCAGGATCAACTTTCTTCTTTTAATTCTTTTGATGTAGATTTTGATAGCTATGGAAAAGTTAAGGCTAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCTGAGCTCTTGGATGAAAGTAAGGTCGTTCCTGTTTCTGTTTTCGGCAATTTAGAGATAGAAATTACTGGCATTCAACATGACTCGAGGATGGTTAACGCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGACACTTATATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAATTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCGTCAAAGAATATGGCCGTGATAGGAATAACTGGGACAGATGGTAAAACCAGCACTTCCTATTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGCTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGTCGCCATGTACAACCCCGGATGCTATTTTGGTTCAAAACTTAATGGCGAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCCGATGGACTTGCTCGAGGCAGGTGTGATGAAGTTGATTTTGATATAGCGGTTTTTACAAATTTGACCAGGGACCATTTGGATTTTCAAGGGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAAGAGGATGGTGGATCCAGACCGGCATCGAAAAGTTGTTAACATTGACGATCCCAATGCACCATTCTTCATAGGGCAAGGAAACCCAGATGTGCCAGTTGTTACCTTTGCAATGGAAAACAAAAATGCCGATGTCCATCCCCTGAAGTACGAATTGTCACTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGCATATTGGAGATATCATCAGGGTTGCTCGGAAAGCATAACATATACAATATTCTTGCAGCAGTGGCAGTGGGGATTGCGGTTGGAGCACCATTAGAGGATATTGTTAGAGGTATTGAAGAGGTCGATGCTGTTCCAGGGAGATTTGAGCTGATTGATGAGGAACAGGCATTTGGTGTAATTGTTGATCATGCTCATACTCCTGATGGCCTGTCCCGGCTGCTTGATTCTGTGAGGGAGCTTGGGCCAAGGAGGATTATCACTGTTTTTGGATGCTGTGGGGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACCAATAAAAGTGATGTTACAATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAACATGGGGAAAATGATTACTATCCGCCTCTCTCAAATGGTCATAGGATTTTCCTGCATGATATTAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGTGAGGAAGGCGACGTGATTGTGGTTGCTGGCAAGGGCCATGAAACATATCAAATTGAAGGTGATAAAAAGGATTTTTTTGATGATAGAGAAGAATGCAGAGAAGCATTGCAGTATGTTGATGAACTCCACCAAGCTGGAATTGACACAAGTGAATTCCCATGGCGGAACTATAAAATGCAGACATTTAAGGCAGATACTAGTCATTTCGTTTCTAATTGTGTTCTTTTGCTTGTTTTCTGGCGTGATACAGGTTACCAGAGAGTCATTGATATACGATTGAAGAAAGGAATGGAAATTCTGGAAGCAATCCTCGGATCAAAACCACCACTGGTGCAGTATTGA 2499 45.02 MASAFTFLPFPLILSPRPTIPSLRPQFHRQYLPSIRILRPSVPSAIGPDGKFYPDPADDDPPEVPEDAGHGVSKFQQIYRQAARARKLQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDDLFGEIDKAIAMKRKEFVKQGLLKPNPKKEKAVEKDDIEGVDELETEEVADLEEINELQGLTVISEDEDENEDEDEDGPGNLDDDVSELGGQDQLSSFNSFDVDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVNAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLESPCTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDEVDFDIAVFTNLTRDHLDFQGSEEEYRDAKAKLFKRMVDPDRHRKVVNIDDPNAPFFIGQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITVFGCCGEHDRGKRPMMTKIATNKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVIVVAGKGHETYQIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRNYKMQTFKADTSHFVSNCVLLLVFWRDTGYQRVIDIRLKKGMEILEAILGSKPPLVQY 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36767458 36771626 - Maker00029403 Lcy12g1641 649704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1641 832 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 584 756 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Lcy12g1641 832 Gene3D - 349 588 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Lcy12g1641 832 MobiDBLite consensus disorder prediction 48 70 - -
Lcy12g1641 832 SUPERFAMILY MurE/MurF N-terminal domain 246 349 IPR035911 -
Lcy12g1641 832 Gene3D - 589 766 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Lcy12g1641 832 Pfam Mur ligase, glutamate ligase domain 586 731 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Lcy12g1641 832 SUPERFAMILY MurD-like peptide ligases, catalytic domain 349 581 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Lcy12g1641 832 MobiDBLite consensus disorder prediction 187 207 - -
Lcy12g1641 832 PANTHER MUR LIGASE FAMILY MEMBER 233 762 - -
Lcy12g1641 832 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 589 762 - -
Lcy12g1641 832 Pfam Mur ligase family, catalytic domain 269 346 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Lcy12g1641 832 MobiDBLite consensus disorder prediction 163 178 - -
Lcy12g1641 832 Gene3D - 247 347 - -
Lcy12g1641 832 MobiDBLite consensus disorder prediction 53 67 - -
Lcy12g1641 832 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 268 756 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Lcy12g1641 832 MobiDBLite consensus disorder prediction 152 213 - -
Lcy12g1641 832 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 246 755 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Lcy12g1641 832 Pfam Mur ligase middle domain 358 563 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1641 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37