Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1643 ATGGGAGCAAAGCATATGCAATCTAATTCTAGCATGGTTGGAAAAGCCTCAAAGAGCCACCAAATGCTGTGCAAAGCTGTTGATAGACCTATCAGAGAACTTCAACAGCCATCTCCTAAAAATTTGGCGGCTGCATCATCAAATAAGCTAGATTCAACAGCATCAACAAGAGTAGCTTGTAGCAGAAGTCGAAGATCTTGTACTTGTAAAAGTTGTATGGAGTTTGGCCGACATAATGAGATCAGCCTAAAATTGGTTCAGAAGAATGAAGCGGCTGAGCCATTTTCAAGTAAAAAGTTTGTTGGTGTGGCTGACAAACAGTGTAAACAATTATTAGATGCATTGGGAATTTTCAATTCAAATAAGGAATTGTTTGTAAATCTACTACAAGACCCAAATTCTCTGTTAATTAAACGTATTGAAGACTCTACTGATTCACGGAACAGAAAACAGCAGATGAGGACTTTCTTTGATGGCAGGTTGTCAGAAAATAAGATAAGAGAAGTGGGGGAATATGATGACCCTGCCTATAGTCAAAACTTGAAGCCCTGTGATAGATTACCCGCTGAGGAAAGTGATGATTCTCTATCCTTGGAAAGAATAGTGGTCTTAAAGCCAAATCCAACTAGCTCTCTGCATTCGGCTGTGGGAACCAATTATTGCTCGTCTCTGAAATCTCATTCTAGTTTCATAAAGAATGTGCAGAGTGACAAGGGAACTCTTTTTTCTTTCAGACAAATAAAGAGGAAGATGAAGCAAGCAATGAGGGTAGGGAGAAAAGAAGTTGAATGCCCATCAACTAATGGTATGTCCAAGAAAACTCCTTTGATCTGTAGGGCCCCGAAAGATGATGGTAAACAGACGGTTATGGAGGCCATTGGAAGAAGTTCCTACAGTAATATTCAAACAGATGACAAAGGAATTTCTATTTCTTTTCAAGATTCCCTGAAAAGAGATCAACTAGACAAGGCATTTTACTCTAGAAATGGGGACAAGACGGCTTCAACCAGTGAAAGTACTGGCAAAAAGGCAGGCCAGTCAGCGGTCTCCGGTCATCTCAAACGACAGAAATCTAAGAAGCATGAAGGGGACAAAGAGGTTTCAAGAAAAATGAAAGCAAAACCATGGGGGTGGGTGATGTGCTTTTCTGATGATGATATATTAGCATCAAATAAACCTGGATGCCATACTGCTGGTCATATGAGATATTCCCACCTTAGCAATAAGAGATTTATTTACGAGAAGAAGTCAAAACCTCAGAATGATGAGAGACAAAGTTGGGAAACTCCACAAACGGCTAAAATAAAAGCTTCTTCTGCAGAGATGAGGACGAGGAGAGAGGATGACCAATTGCATAGGTCAAATACAGAGTTGAATGTATCACACGTCATTTCTCCTGATGTCAAAGTGGATGAAGATTCAATTGTCGAAGGGTCTGTGAAGATCGTAAAAGACATTGCCACTATACACCAGGAAGGAAATATTTTTTGTGAAGCATCATCTGGATTTGATAACAATTGCAACACTAGTTTTTGTCACACAACCAACAAGATACATGACTTTGGAGAAAAAGGAAATCTGGAGCTCTCTAAGCTGAATTTGCCGTTGGAGGTTCAACCATCAGCCTTGTTCGATACATCTCCATCCAGCTCATCAAGATTTCAAACAGTGGAAGATCCTAATAGTTTGTGTGATAAAGAAGTGCAGCCACTACCAGAAACTATTCCTGACCAACTTTTGGTAGATGCTGCCTCTCGTAATCTTGGTTTCACCCCAGGAACAGCTGAGTCAACTGGTGAAGCACTCCCCATTAATTTTGAAGAGGACCCTGGTTTGGCAAGGTTGCTAGAGGTTCTCAATCCTGCCATCGCTTCCTTTAATTGTTGTGGCTCCATCTCTCAGCCTGTACTTGAGCTGCTGCAAGTCTCAAAACAGAATTGGAATGAACTGTCAATGGATTGTCATTCTTCAGCTTGGCTGAGGATACCGTTTGTCGACAAAGTGAAGTTGTTTAGTAGCCAGTTATGTGGTGATTGTGTGCTTATTTTCGACTATTTTAATGAAGTCCTTGAGGATGTTTTCTACTGTTATATTAGATGCTCCCCATGGTTATCATCTTATAAGGCACATGTCCCAGCACCCGATAAGGAAAGCGCTTTGTATCATGAGGTTATGCAACATGTAGACTGGCCTCTTCTGCAGCAGCAGCCACCACAAACACTGGACGATCTTTGTTTAAGAGACTTGAGATGTAGAACATGGATCAATAATCCAACTGAAACTGAAGAGATTGTTACCATTATAGCGGAATCAGTTTTAAAAGAATTAATCATTGAAAGTGTTGTTTACCTTGGTTTGTGA 2361 40.49 MGAKHMQSNSSMVGKASKSHQMLCKAVDRPIRELQQPSPKNLAAASSNKLDSTASTRVACSRSRRSCTCKSCMEFGRHNEISLKLVQKNEAAEPFSSKKFVGVADKQCKQLLDALGIFNSNKELFVNLLQDPNSLLIKRIEDSTDSRNRKQQMRTFFDGRLSENKIREVGEYDDPAYSQNLKPCDRLPAEESDDSLSLERIVVLKPNPTSSLHSAVGTNYCSSLKSHSSFIKNVQSDKGTLFSFRQIKRKMKQAMRVGRKEVECPSTNGMSKKTPLICRAPKDDGKQTVMEAIGRSSYSNIQTDDKGISISFQDSLKRDQLDKAFYSRNGDKTASTSESTGKKAGQSAVSGHLKRQKSKKHEGDKEVSRKMKAKPWGWVMCFSDDDILASNKPGCHTAGHMRYSHLSNKRFIYEKKSKPQNDERQSWETPQTAKIKASSAEMRTRREDDQLHRSNTELNVSHVISPDVKVDEDSIVEGSVKIVKDIATIHQEGNIFCEASSGFDNNCNTSFCHTTNKIHDFGEKGNLELSKLNLPLEVQPSALFDTSPSSSSRFQTVEDPNSLCDKEVQPLPETIPDQLLVDAASRNLGFTPGTAESTGEALPINFEEDPGLARLLEVLNPAIASFNCCGSISQPVLELLQVSKQNWNELSMDCHSSAWLRIPFVDKVKLFSSQLCGDCVLIFDYFNEVLEDVFYCYIRCSPWLSSYKAHVPAPDKESALYHEVMQHVDWPLLQQQPPQTLDDLCLRDLRCRTWINNPTETEEIVTIIAESVLKELIIESVVYLGL 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36794929 36800554 + Maker00029476 Lcy12g1643 649706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1643 786 MobiDBLite consensus disorder prediction 439 454 - -
Lcy12g1643 786 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 4 782 - -
Lcy12g1643 786 MobiDBLite consensus disorder prediction 417 454 - -
Lcy12g1643 786 Pfam Protein of unknown function (DUF3741) 107 134 IPR022212 -
Lcy12g1643 786 MobiDBLite consensus disorder prediction 327 370 - -
Lcy12g1643 786 MobiDBLite consensus disorder prediction 329 346 - -
Lcy12g1643 786 Pfam Domain of unknown function (DUF4378) 643 779 IPR025486 -
Lcy12g1643 786 MobiDBLite consensus disorder prediction 424 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1643 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1970 Lcy-Chr11:43309861 Lcy12g1643 Lcy-Chr12:36794929 1.43E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00276 Chy09g01233 . . . . . . . . . . . . . . . . . . Bhi12g00270 . . Lac11g2084 Hepe06g1539 . Lcy12g1643 Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 Lsi09g00252 . . Cme09g01768
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007276 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 6 1 1 36