Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1649 ATGGCTACGTTAGGGTCTAACTCTGATACGGTGATACCACTTATTAAGGCTAAGGACACTCCACATATCTCTACAATGATTGGTTTGACAAACAGGGCAGTTGGAGCCACAGCCCTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTGCGTGGTAGTCTTCATTTAATTGATCTTGCCGGTAGTGAAAGGGTGGACCGCTCAGAGGCGACTGGAGATAGGCTGAAGGAGGCACAACATATTAATAAATCATTGTCAGCTCTTGGGGATGTAATTTTTGCTCTTGCACAGAAGACTTCGCACATTCCTTACAGAAATAGCAAACTAACACAAGTTCTCCAAAGTTCTTTAGGTGGTCAAGCAAAAACGCTCATGTTTGTACAGATTAATCCCGATGCAGAGTCCTACTCTGAAACTGTTAGCACCTTGAAGTTTGCAGAACGAGTTTCTGGTGTGGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCAGTTCTCAAGGATACCGTCGCAAATAAAGATGAGGAGATTGAGCGGTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGTATGGCATTGGTTCCCCAAGATATGAATCATTTTCTCCTAGAAGGCACTCTAGCATGACTCCTCGGCCGAGCCAAAGGCCATCAGGGAGAAAAGGCTTCGGGTTGATTAATAAAGCAGCATCGGACGTGGACAATTACTCAGATTGTGGGCGTTCTGAAACTGGATCACATCAGTCTATGGACGACTTTAGACATCATATGCGTTCAGGATCTGGATCACATCTGTCTGTAGAGGACTTTAGACATCACAAGCGTTCTGGATCTGGATCACATCTGTCTGTAGAGGACTTTAGACATCAGAAGGAACCTTCTTCACCGTCAAGGGATTTAGGTCAGAATGTTACTGATGATGTTGACCTTTTAAGCTTTGGGAATGCTGATTCTGATGAGAGGTTAAGTGACATATCAGATGGTGGCCTTTCGATGGGGACGGAGACCGATGGATCGATATGCAGTGTCGTGGAATACACTCTATTCCCTGAAGTTTTAAAACCATCAGATGGTTCGATTGCCGATACCAAACACCCAGAGAGCACGTTGGATGTAAAAAGGCCAGCTGAGAGTGCAACAACTGGGGGGAAGTCATTGGTTCCTATTCCAGAGAAAAGCAAGGCACCATCAAAGACAGCCACTAGACCCCCACAAAAGCCTGTGCAAGCAAAACCGTCAAGAGTTTCACTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAAGTGCTAAAAGTTCGATTGTTGGTAGCTCCTCGTCGATGAAAAGCGGAAAAAGGTGGAAGTAA 1425 45.26 MATLGSNSDTVIPLIKAKDTPHISTMIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKTSHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDAESYSETVSTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTVANKDEEIERLQLLKTNGNGVKYGIGSPRYESFSPRRHSSMTPRPSQRPSGRKGFGLINKAASDVDNYSDCGRSETGSHQSMDDFRHHMRSGSGSHLSVEDFRHHKRSGSGSHLSVEDFRHQKEPSSPSRDLGQNVTDDVDLLSFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPEVLKPSDGSIADTKHPESTLDVKRPAESATTGGKSLVPIPEKSKAPSKTATRPPQKPVQAKPSRVSLTKSSSKAPSASSAKSSIVGSSSSMKSGKRWK 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36857745 36861444 + Maker00029320 Lcy12g1649 649712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1649 474 MobiDBLite consensus disorder prediction 271 321 - -
Lcy12g1649 474 MobiDBLite consensus disorder prediction 424 474 - -
Lcy12g1649 474 PANTHER KINESIN-LIKE PROTEIN KLP-3 27 445 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Lcy12g1649 474 Coils Coil 181 208 - -
Lcy12g1649 474 Gene3D Kinesin motor domain 20 209 IPR036961 -
Lcy12g1649 474 SMART kinesin_4 3 175 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1649 474 MobiDBLite consensus disorder prediction 384 398 - -
Lcy12g1649 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 205 IPR027417 -
Lcy12g1649 474 FunFam Kinesin-related protein3 7 209 - -
Lcy12g1649 474 MobiDBLite consensus disorder prediction 218 330 - -
Lcy12g1649 474 ProSitePatterns Kinesin motor domain signature. 67 78 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Lcy12g1649 474 Pfam Kinesin motor domain 27 165 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1649 474 ProSiteProfiles Kinesin motor domain profile. 1 167 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1649 474 PRINTS Kinesin heavy chain signature 37 54 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1649 474 PRINTS Kinesin heavy chain signature 68 86 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1649 474 PRINTS Kinesin heavy chain signature 117 138 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1649 474 MobiDBLite consensus disorder prediction 227 241 - -
Lcy12g1649 474 MobiDBLite consensus disorder prediction 380 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1649 K27887 - - csv:101218386 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1649 Lcy-Chr12:36857745 Lcy5g0770 Lcy-Chr5:11313256 3.69E-100 dispersed
Lcy12g1649 Lcy-Chr12:36857745 Lcy13g0389 Lcy-Chr13:4426591 6.47E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54