Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1654 ATGAGAGAAATCCTCCATCTTCAAGCAGGACAGTGTGGAAACCAGATTGGGGCTAAGTTTTGGGAAGTTGTTTGTGATGAACATGGGATCGATCCCACCGGAAAATACATCGGAAGTACTAACGTTCAACTTGAGAGGGTAAATGTTTACTATAACGAAGCGAGCGGTGGCCGATACGTTCCGAGGGCTGTTTTGGTAGACCTTGAACCAGGAACCATGGACAGCCTCAGGACAGGTCCTTATGGGAATATATTTAGGCCTGATAACTTTGTTTTTGGGCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACTGAGGGAGCTGAACTGGTTGATTCTGTTCTTGATGTGGTTCGTAAAGAAGCTGAGAATTGTGATTGTTTACAAGGGTTTCAAGTTTGCCATTCACTTGGAGGAGGGACTGGATCTGGAATGGGAACCCTATTGATATCAAAGATCAGGGAAGAGTATCCTGATAGGATGATGTTAACTTTCTCTGTCTTCCCTTCACCTAAGGTCTCAGATACAGTGGTTGAGCCCTATAATGCCACTCTCTCTGTGCATCAGTTGGTTGAAAATGCTGATGAGTGCATGGTCTTGGATAATGAAGCACTCTATGATATCTGCTTTAGGACCCTCAAGCTCACCAATCCAAGTTGGGAAGGAATGGATGAGATGGAGTTCACAGAGGCTGAGAGTAATATGAATGATTTGGTATCAGAGTACCAGCAGTATCAAGATGCTGTGGCAGAGGATGAGGAGGAGGACGATATGCTGGACCGCGAATAG 795 45.16 MREILHLQAGQCGNQIGAKFWEVVCDEHGIDPTGKYIGSTNVQLERVNVYYNEASGGRYVPRAVLVDLEPGTMDSLRTGPYGNIFRPDNFVFGQNGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSWEGMDEMEFTEAESNMNDLVSEYQQYQDAVAEDEEEDDMLDRE 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36907870 36910615 + Maker00029395 Lcy12g1654 649717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1654 264 SUPERFAMILY Tubulin C-terminal domain-like 223 248 IPR008280 -
Lcy12g1654 264 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 CDD beta_tubulin 2 244 - -
Lcy12g1654 264 SMART Tubulin_4 47 249 IPR003008 GO:0005525(InterPro)
Lcy12g1654 264 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 228 IPR036525 -
Lcy12g1654 264 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Lcy12g1654 264 PANTHER TUBULIN 1 222 IPR000217 GO:0000226(PANTHER)|GO:0000278(PANTHER)|GO:0005200(PANTHER)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0005874(InterPro)|GO:0007017(InterPro)
Lcy12g1654 264 FunFam Tubulin beta chain 1 228 - -
Lcy12g1654 264 Coils Coil 230 264 - -
Lcy12g1654 264 Gene3D Tubulin/FtsZ, GTPase domain 1 249 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1654 K07375 - - csv:101219333 442.965
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1654 Lcy-Chr12:36907870 Lcy1g1778 Lcy-Chr1:19014060 1.88E-178 dispersed
Lcy12g1654 Lcy-Chr12:36907870 Lcy4g0153 Lcy-Chr4:1981037 3.21E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g325 Blo02g01109 . . Bda08g00518 Bpe05g00643 Bpe07g00111 . . . . Cma02g01455 . Car02g01221 . . . Cpe05g00332 . . . . . . . . . . . . . . . Cone7ag1495 Cone17ag1408 Cone20ag0075 . Csa05g00284 Chy09g01224 . . . . . . . Bma05g00818 . . Cmo02g01490 . . . . . . . Bhi12g00257 . . Lac11g2095 Hepe06g1547 . Lcy12g1654 Cla01g00267 Cam01g0274 Cec01g0267 Cco01g0282 Clacu01g0274 Cmu01g0262 Cre09g2246 Lsi09g00262 . . Cme09g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012642 0 0 2 0 0 0 9 0 0 0 0 0 0 0 0 0 1 0 9 0 0 0 1 0 3 1 0 0 0 3 29