Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g1658 | ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCAATGCCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAGCCCCCACATCCAAATTATCTTCGTGGGATGAGTATGAATGTCTCAGCTGGAGTGAACTCTGGTGAGCCTGTAAAGAAGAAGAGAGGGAGACCAAGGAAATATGCTCCAGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGCCGGTTCTAAGCTCACTCCAGGTTCGAATTCGTCGACCCCGAGACGTCGAAGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCCCTTCTTGGTGAGTGGATGAACAATTCAGCTGGACTAGCTTTTGCCCCTCATGTCATTCACGTTGGAGCTGGAGAAGACATTGTGGCAAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCGTCCTGTCAGGCAACGGTACTGTTTCTTCAGTAACACTTCGTCAGCCTGCATCTACTGGTGTGAGCGTCACATATGAGGTTGAAGAATTATTTTATTTGATTTTACATATTCTCTTCATGAAAAATCATATGACATTGATTTATTTGCCTCTCTGTTTGACAATATATGAAACTTGA | 747 | 47.79 | MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMPNQGVLSHSNLRGNSVGSTYAVEPPHPNYLRGMSMNVSAGVNSGEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGEWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEVEELFYLILHILFMKNHMTLIYLPLCLTIYET | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 36973309 | 36974709 | + | Maker00029249 | Lcy12g1658 | 649721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g1658 | 248 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 161 | 224 | - | - | |
Lcy12g1658 | 248 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 163 | 205 | IPR005175 | - | |
Lcy12g1658 | 248 | Gene3D | - | 163 | 226 | - | - | |
Lcy12g1658 | 248 | CDD | DUF296 | 163 | 221 | IPR005175 | - | |
Lcy12g1658 | 248 | MobiDBLite | consensus disorder prediction | 112 | 133 | - | - | |
Lcy12g1658 | 248 | MobiDBLite | consensus disorder prediction | 27 | 143 | - | - | |
Lcy12g1658 | 248 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 71 | 216 | IPR039605 | GO:0003680(InterPro) | |
Lcy12g1658 | 248 | ProSiteProfiles | PPC domain profile profile. | 158 | 248 | IPR005175 | - | |
Lcy12g1658 | 248 | PRINTS | AT-hook-like domain signature | 129 | 140 | IPR017956 | GO:0003677(InterPro) | |
Lcy12g1658 | 248 | PRINTS | AT-hook-like domain signature | 93 | 103 | IPR017956 | GO:0003677(InterPro) | |
Lcy12g1658 | 248 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1658 | Lcy-Chr12:36973309 | Lcy12g1941 | Lcy-Chr12:40769394 | 9.97E-34 | dispersed | |
Lcy12g1658 | Lcy-Chr12:36973309 | Lcy13g0673 | Lcy-Chr13:9570844 | 2.00E-56 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g1658 | - | - | - | 0.0 |