Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1658 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCAATGCCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAGCCCCCACATCCAAATTATCTTCGTGGGATGAGTATGAATGTCTCAGCTGGAGTGAACTCTGGTGAGCCTGTAAAGAAGAAGAGAGGGAGACCAAGGAAATATGCTCCAGATGGGCAGGTCTCATTGGGTCTGTCTCCCATGTCTGCCGGTTCTAAGCTCACTCCAGGTTCGAATTCGTCGACCCCGAGACGTCGAAGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCCCTTCTTGGTGAGTGGATGAACAATTCAGCTGGACTAGCTTTTGCCCCTCATGTCATTCACGTTGGAGCTGGAGAAGACATTGTGGCAAAAGTATTGTCGTTTGCACAGCAGAGGCCAAGGGCTGTTTGCGTCCTGTCAGGCAACGGTACTGTTTCTTCAGTAACACTTCGTCAGCCTGCATCTACTGGTGTGAGCGTCACATATGAGGTTGAAGAATTATTTTATTTGATTTTACATATTCTCTTCATGAAAAATCATATGACATTGATTTATTTGCCTCTCTGTTTGACAATATATGAAACTTGA 747 47.79 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMPNQGVLSHSNLRGNSVGSTYAVEPPHPNYLRGMSMNVSAGVNSGEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGEWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEVEELFYLILHILFMKNHMTLIYLPLCLTIYET 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36973309 36974709 + Maker00029249 Lcy12g1658 649721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1658 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 224 - -
Lcy12g1658 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 205 IPR005175 -
Lcy12g1658 248 Gene3D - 163 226 - -
Lcy12g1658 248 CDD DUF296 163 221 IPR005175 -
Lcy12g1658 248 MobiDBLite consensus disorder prediction 112 133 - -
Lcy12g1658 248 MobiDBLite consensus disorder prediction 27 143 - -
Lcy12g1658 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 216 IPR039605 GO:0003680(InterPro)
Lcy12g1658 248 ProSiteProfiles PPC domain profile profile. 158 248 IPR005175 -
Lcy12g1658 248 PRINTS AT-hook-like domain signature 129 140 IPR017956 GO:0003677(InterPro)
Lcy12g1658 248 PRINTS AT-hook-like domain signature 93 103 IPR017956 GO:0003677(InterPro)
Lcy12g1658 248 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1658 Lcy-Chr12:36973309 Lcy12g1941 Lcy-Chr12:40769394 9.97E-34 dispersed
Lcy12g1658 Lcy-Chr12:36973309 Lcy13g0673 Lcy-Chr13:9570844 2.00E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1658 - - - 0.0