Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1661 ATGTTGAGGTTGCCGCGGCGGAAACGGTCGCCGGAGGCAACAGAGGAGAGTGCAAATAATGCAGCTATTAAAGACGACGACGAGACGGCGGCGGCGGCGGCGTCCAAGGCGGTGCTCTGTATTTCCGGCATGAGTTGCTCTGCTTGCGCTGTTTCTGTCGAGAATTCCATCAAACAACTTCCAGGCATTCTCGATGCCGCCGTCGATTTCTTGAACGATAGGGCTCAAATCCTCTTTCTCCCCAATCTCATCGACGAAGAGACAATACTTAAAGCAATTGAAAATGCTGGATTTCAAGCTTCGATATCGAAGGACGGGACCGAGCATCGATCGCGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGCTGCAATTCTTGCTCTTCCATGGTAGAGTCAGTTTTGGAAGAAATGTATGGAGTACAAAAGGCTCACATTGCTCTGTTGAAAGAGGAAGCAGAAGTTCACTATGATCCAAAGGTTGTTAATTGCAGTCAGTTCATTGTAGCCATACAAGATATTGGCTTTGAAGCCTTACTTATAACCATTGGTGAACACATTAGCAAGATTGAGCTTAAGGTTGATGGTATGCATAACGAAAACTCGACCGCAAAAGTTAAAGAATCACTCGAATCGGTCCCGGGAATCGAAGATGTCGATATCGATATGTCATTGAGCAAAGTTACCATATCTTATAGGCCTGATATAACAGGACCTAGAACTTTCATCGAAGTCATCGAGTCGATCAAATCCGAGCATTTCAAGGCGACGATATATCCCGAAGAAGTGGGGCGAGAAACTCGTAAGGAGAAAGAAATTAGACAGCATTATAAGTACTTTTTGTGGAGCTCTGCTCTCTCTATTCCTGTTTTCTTAACATCTATGGTCTTCATGTATATACCTGGAATCAAGCAGACATTAGATATCAAAGTAGTCAATATGATGAATGTTGGACAGATTATCAGATGGAATTTGTCGACTCCGGTGCAGTTCGTCATAGGTTTGAGATTCTACGTCGGATCGTATAAAGCGTTGCGGCGTGGTTCTGCCAACATGGATGTATTGATTACATTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATATAGTGCTAAGAGCAGCTACATCCCCTGCTTTCAATGGAACTGATTTCTTTGAGACTAGTTCAATGTTGATCACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTGGCAAAAGGAAAGACCTCTGAGGCCATTGCCAAGCTTAAGCACTTGGCTCCCGAGACGGCGACGCTCTTGACGCTAGATGGCCATGGAAATGTCATAGGCGAAGTGGAAATCAGTAGTGAGTTGATTCAAAAGAATGATGTTATTAAGATTACACCAGGTGCGAAAGTAGCTTCTGATGGTCTCGTCGTATGGGGCGAAAGTCATGTCAATGAGAGTATGATCACCGGAGAAGCAAAACCGGTTGCGAAAAGGACCGGCGACAAGGTGATAGGAGGAACTGTGAATGAGAATGGGGTATTGCATATAAAGGCAACACATGTCGGATCGGAGAGTTCTTTAGCGCAAATCGTTCGACTCGTCGAATCGTCTCAGTTGGCGAAAGCTCCTATTCAGAAATTTGCAGACCATATCTCTAAGTATTTTGTGCCTCTGGTAAGTGCTAGGCTTCCTTTTGATTGTTTTATGCTTGCCTTTTTTGATCACAACAGTCCTTTCTATACACTTTTGCAGGTAATTTCACTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTGCATCTCTATCCTAAGTCCTGGTTGCCTTCTTCAATGGACAGTTTTGAGCTTGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCCCTCGGCCTCGCCACCCCGACCGCCGTGATGGTCGGTACCGGTGTCGGTGCATCTCAAGGTGTTCTAATCAAAGGTGGTCAAGCATTAGAATTTGCACACAAGGTGAGTTGCATTGTGTTTGACAAGACAGGAACATTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAAACTTATGGACACTATAGTACTTGAGGAACTTCTTGAACTCACTGCTGCAACTGAGGTGAACAGTGAGCACCCAGTGGCCAAGGCCATTGTTGAATATGGCAAGCAATTCAAGGAAGAACAGAACCCCATTTGGCCAGAAGCTCAAGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCACTGTAAGGAACAAGAAAGTAATGGTTGGAAACAAGAGCTTGATGATGAACAATGACATAGAAATTCCGGGGGAAGCGGAAAGCTTCATCGTCGACGCTGAAGGCATGGCGCAAACTGCGGTTTTCGTGGCCATAGATCGGACGGTGTCGGGAGTTATCGCGGTGTCCGATCCGTTGAAACCGGGCGCCAAAGAAGTCATCTCCATTCTCAAGTCTATGGAAGTAAAGAGCATCATGGTAACAGGTGACAATTGGGGAACTGCACATTCCATTGCCAAAGAAGTTGGAATTGAAACAGTCATTGCAGAGGCCAAGCCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGACAGCGGGACACACGGTGGCGATGGTGGGAGACGGGATCAATGACTCGCCTGCCCTTGTAGCGGCCGATGTCGGGATGGCGATCGGAGCTGGCACGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTGATCTTTCAAGAAAAACCTTTGCAAGAATTCGCCTGAATTACATTTGGGCACTTTTCTATAATCTTCTCGCCATTCCAATCGCCGCAGGCGTCTTGTTCCCTTCGACTCGGTTTCGACTACCGCCGTGGATCGCCGGAGCTGCCATGGCAGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACCAGAGACCAAAGAAGCTTGATGAAGTTGAGATTCAAATGAAAGGAATAGTGGTTGAATGA 3003 45.39 MLRLPRRKRSPEATEESANNAAIKDDDETAAAAASKAVLCISGMSCSACAVSVENSIKQLPGILDAAVDFLNDRAQILFLPNLIDEETILKAIENAGFQASISKDGTEHRSREVCRIRVNGMGCNSCSSMVESVLEEMYGVQKAHIALLKEEAEVHYDPKVVNCSQFIVAIQDIGFEALLITIGEHISKIELKVDGMHNENSTAKVKESLESVPGIEDVDIDMSLSKVTISYRPDITGPRTFIEVIESIKSEHFKATIYPEEVGRETRKEKEIRQHYKYFLWSSALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGQIIRWNLSTPVQFVIGLRFYVGSYKALRRGSANMDVLITLGTNAAYFYSVYIVLRAATSPAFNGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHGNVIGEVEISSELIQKNDVIKITPGAKVASDGLVVWGESHVNESMITGEAKPVAKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVSARLPFDCFMLAFFDHNSPFYTLLQVISLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEFAHKVSCIVFDKTGTLTIGKPVVVNVKLMDTIVLEELLELTAATEVNSEHPVAKAIVEYGKQFKEEQNPIWPEAQEFISIPGHGVEATVRNKKVMVGNKSLMMNNDIEIPGEAESFIVDAEGMAQTAVFVAIDRTVSGVIAVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTAHSIAKEVGIETVIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIDLSRKTFARIRLNYIWALFYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYQRPKKLDEVEIQMKGIVVE 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36995496 37005428 - Maker00029352 Lcy12g1661 649724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1661 1000 SFLD p-type atpase 647 921 IPR044492 -
Lcy12g1661 1000 CDD HMA 41 101 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 SUPERFAMILY HMA, heavy metal-associated domain 183 250 IPR036163 GO:0046872(InterPro)
Lcy12g1661 1000 ProSitePatterns Heavy-metal-associated domain. 41 70 IPR017969 GO:0046872(InterPro)
Lcy12g1661 1000 FunFam Copper-transporting ATPase HMA5 34 105 - -
Lcy12g1661 1000 Gene3D - 632 926 IPR023214 -
Lcy12g1661 1000 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 944 IPR023298 -
Lcy12g1661 1000 PRINTS Copper-transporting ATPase 1 signature 91 111 - -
Lcy12g1661 1000 PRINTS Copper-transporting ATPase 1 signature 36 61 - -
Lcy12g1661 1000 PRINTS Copper-transporting ATPase 1 signature 62 85 - -
Lcy12g1661 1000 PRINTS Copper-transporting ATPase 1 signature 137 158 - -
Lcy12g1661 1000 ProSiteProfiles Heavy-metal-associated domain profile. 35 101 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 Gene3D - 109 180 - -
Lcy12g1661 1000 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 20 551 - -
Lcy12g1661 1000 Pfam E1-E2 ATPase 420 643 - -
Lcy12g1661 1000 Gene3D - 672 749 IPR023299 GO:0000166(InterPro)
Lcy12g1661 1000 Gene3D - 750 800 IPR023299 GO:0000166(InterPro)
Lcy12g1661 1000 NCBIfam HAD-IC family P-type ATPase 599 951 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy12g1661 1000 SUPERFAMILY HAD-like 664 975 IPR036412 -
Lcy12g1661 1000 SFLD C1.7: P-type atpase like 647 921 - -
Lcy12g1661 1000 FunFam ATPase copper transporting beta 109 182 - -
Lcy12g1661 1000 PRINTS P-type cation-transporting ATPase superfamily signature 816 826 - -
Lcy12g1661 1000 PRINTS P-type cation-transporting ATPase superfamily signature 665 679 - -
Lcy12g1661 1000 PRINTS P-type cation-transporting ATPase superfamily signature 794 805 - -
Lcy12g1661 1000 PRINTS P-type cation-transporting ATPase superfamily signature 892 904 - -
Lcy12g1661 1000 PRINTS P-type cation-transporting ATPase superfamily signature 869 888 - -
Lcy12g1661 1000 PRINTS P-type cation-transporting ATPase superfamily signature 475 489 - -
Lcy12g1661 1000 Pfam Heavy-metal-associated domain 41 98 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 Pfam Heavy-metal-associated domain 117 177 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 Pfam Heavy-metal-associated domain 192 250 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 SUPERFAMILY HMA, heavy metal-associated domain 113 184 IPR036163 GO:0046872(InterPro)
Lcy12g1661 1000 FunFam Copper-transporting ATPase 1, putative 407 529 - -
Lcy12g1661 1000 FunFam Probable copper-transporting ATPase HMA5 773 926 - -
Lcy12g1661 1000 Gene3D - 189 258 - -
Lcy12g1661 1000 CDD HMA 191 257 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 ProSitePatterns Heavy-metal-associated domain. 119 149 IPR017969 GO:0046872(InterPro)
Lcy12g1661 1000 Gene3D - 34 108 - -
Lcy12g1661 1000 ProSiteProfiles Heavy-metal-associated domain profile. 188 254 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 NCBIfam copper ion binding protein 117 178 IPR006122 GO:0005507(InterPro)
Lcy12g1661 1000 SUPERFAMILY Calcium ATPase, transduction domain A 439 525 IPR008250 -
Lcy12g1661 1000 MobiDBLite consensus disorder prediction 1 22 - -
Lcy12g1661 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 667 673 IPR018303 -
Lcy12g1661 1000 SUPERFAMILY HMA, heavy metal-associated domain 35 104 IPR036163 GO:0046872(InterPro)
Lcy12g1661 1000 Gene3D - 407 529 - -
Lcy12g1661 1000 Pfam haloacid dehalogenase-like hydrolase 662 883 - -
Lcy12g1661 1000 ProSiteProfiles Heavy-metal-associated domain profile. 113 179 IPR006121 GO:0046872(InterPro)
Lcy12g1661 1000 NCBIfam heavy metal translocating P-type ATPase 352 978 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lcy12g1661 1000 CDD P-type_ATPase_Cu-like 280 965 - -
Lcy12g1661 1000 CDD HMA 117 178 IPR006121 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1661 Lcy-Chr12:36995496 Lcy1g1707 Lcy-Chr1:17870056 0 dispersed
Lcy12g1661 Lcy-Chr12:36995496 Lcy4g1622 Lcy-Chr4:41100998 4.40E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1661 K17686 - csv:101220448 1672.52