Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1671 ATGTTCAAGTCGGCGAGATGGAGGAGTGAGAAGAACAAGGTTAAGGCGGAATTTAAGTTGCAGTTTTATGTCACTCAGGTGTCACAGTCAGTGGTGGATGCATTGACGTTATCCGTGGTTCCTGGAGATGTGGGAAAGCCAACTGCAAGACTGGATAAAGCCACAGTTCGTGATGGAAGTTGCAAATGGGAAAACCCAGTTTATGAAACAGTCAAGTTCGTGCGGGACGCAAAGTCTGGGAAAATCAATGAGAAAATCTATTACTTCCTCGTCTCAATGGGACGGGCAAAGTCCAGGGTGTTTGGGGAGGTTTCTATCAACTTAGCTGATTATGCCGAAGCCACAAAATCTTCTTCTGTTTCTCTTCCCCTAAAGAATTCAAATTCTGATGCGGTTTTGCACGTTTTGATACAGAAGTTGCAGGCTAAAATTGAGCCAAGAGAGGTGGAAGATTTTGAGAATGCCAGCGTTGGATCCCAGGAAACGAACTTGAAAACATACTTGAACAATGGTGAAATAGATGAAAGCAATAAAAACAATTGTACTGAAGATGAGCAGATTAGCAAGAGCTCTCATGATTTTGAACTAAATGGCAACTGTAGAGAATCAAGTGGATCTGATATTACATTGTCAAGTTCTGAGAGCAGCTCTGGACTTGATACTCCCCGGGAACATAGAGCGAGAAACAATAACCATCTTCAACCTGTTAGTTTATCTTCAGTTCCTCATAAACCAGTGACATTCCTTTCAACAACCACTGATAAGGAGAATCAGAGATCACAATCAGTGTGGTCTCTTGGTTCTGATCATGGAGTAAGCATAGATGAATCATCAGATGATATGCCTCTCAAAGAAAGGTCTGGACCAGTTACGAGGTCTGAAAAAGTTGCAGATATTGAGATTGAAAAGCTCAAGACTGAGCTTGTTGGCTTTTCCAGGCAGGCAGAAGTTTCAGAATTGGAACTACAGACGCTTCGAAAGCAAATTGTGAAAGAAAGTAAAAGGGGTCAGGATTTGTCAAAAGAAATTGTCATTTTGAAAGAGGAGAGGGACTCACTCAGGCTGGAATGCGAGAAACTGAGGGCCAAATCCAAAAACAACATCGAGTTGGGGGATAAGAAAATGGAGGCTCTTCTGGAAGAAATGAAGGAAGAACTACACCACGAGAAGGAATTAAATGTCAATCTTCGACTACAACTCCAGAAGACCCAGGAATCTAATAATGAGTTGATTCTTGCAATGAGAAACCTAGAGGAAATGTTAGGGCAGAAAAATGGTGAAAGAGTCCATCTCTATGACAGATCAAGATTTTCTGAGAATGCTGAAGAGTTCTATAATTCCATCTCGAAGTGTGAATCTGAGGATGATGAGGAGCAGAAGGCATTGGAAAAGCTTGTTAAGCAGCACAGTAATGCAAATGAAACATATCTTCTGGAACAAAAGGTTATTGACCTATATAGTGAAGTAGAATTCTACAAGAGAGAAAAGGATGAATTAGAAATGCACATGGAACAACTAGCACTTGACTATGAAATACTGAAACAGGAAAATCATGGCATGTCATATAAACTGGAGCAATGTGAACTGCAGGAGAAACTCGACATGAAAGAAGAATGCACTCCTTCAGCTACCATAGTAGAGCTGGAAACCCAGGTAGAACACTTGGATGGGGAACTTAAGCAGCGGTCTAAAGACTTCTCTGATTCTTTGAGCACCATAAAAGAACTTGAAGCCCATATCCGGGCCTTGGAGGAAGAACTGGAGCAGCAAGCTGAAAAGTTTGTAGCTGATCTAGAAGGTATGACACGTGCCAAAATTGAGCAGGAGCAAAGAGCCATCCTAGCAGAGGAGGACTTGAGAAAGACAAGGTGGAGAAATGCTAATACAGCTGACAGGCTACAAGAAGAACTCAAGAGGCTTTCAATGCAGATAGCCTCGACATTTGATGCAAATGAGAAGGTAGCTGCTAAAGCAGTGGCAGAATCTATCGAGCTGCAACTTCAGAAAATTCAATTAGATGAAAAACTTGCGTCTACTAATAAGGAGCTTCAATCAGTTAAGAAGGAGTACGAGGCAAAGCTCTATGAACTCTCAAACGTGGTAGATTTGCAAACAAGTCAGATCGAACAGATGTTTTTAGAACTTCATACGAAGTCCAAGCTGCTTGACCAGCAGGAGATTCAAAAAGAGGTTTGTGAATCTCTCTCTCGGGAGATTTTGTTGCTCAAGTATGAAATTGAAAGGCTCACAACAGAGAATAGGTCACTCAAGGAAACCGAGAGCTTGATCCAGAACAAAATCATGGAAAGAAATGAGCTGGTAACAACCATTGCTTTGATTATGAAAGAAGGCGAGAAGTTTCAAAATGAGTTAAATAGAATAAGGTATCGGAAGAACGAATATGAGATATCAATGGGTTGTCTACAAACAGAGTTGGAGGTGCTCAGAGATCACTGCAGTGACTTAAAACATTCTTTGGTCGAAGGGGAGATTGAGAAAGATAAACTTAGACATCAGGTCTATCAGCTCAATGATGACCTAAAGAAGATGAAAGAATTCAATGGTGTTGACATGCTCTGGTATAGTGAGGAGCACACATCAGCTTGTGATGGAATTGAAACTTTTATGGAAAGCAAAAAATCCACTCCTTCGGAAAGTAGCCCCAAGGAAGTTGCAGTTCTAAAGGAGAAAATTGAGTTGCTTGAGAAACAGATAAGTTTGAGAGAAGACGCCATAGAAACTCTAGCTAGTAGAATTTCAGAAAAGGCGATGGATTTTCAGCACACAATTGAAGAGTTAGAGTGCAAATTGGGACAAGTTGTTCCTACTAGCACATTCCAAGAGGTAAATGGATGTAAAAGCAACATCAAAATAACCAGTGATATACCCAAGGATACAGTGGTGAACCAAAGCCAAAACACAAACTGTTCATCATCCACAGAATATGGGAATGTCGTGTCAGTTGGGAGGAATGATAGAATTTCAGAAGATGAAGAACTGAAAGCCTGCAAACTTGACAACAGCAACAACAATTGTGACAAATTTTCAACAGAATTAGCATTATTGAGGGAAAGAAACAAATTAATGGAAAGTGAACTAAAGGAAATGCAAGAGAGATATTCAGAGATAAGTCTCAAGTTTGCAGAGGTAGAAGGTGAAAGACAACAGCTTGTAATGACTCTACGCAGTCTTAAAAATTACAAGAAGATTTAG 3213 40.52 MFKSARWRSEKNKVKAEFKLQFYVTQVSQSVVDALTLSVVPGDVGKPTARLDKATVRDGSCKWENPVYETVKFVRDAKSGKINEKIYYFLVSMGRAKSRVFGEVSINLADYAEATKSSSVSLPLKNSNSDAVLHVLIQKLQAKIEPREVEDFENASVGSQETNLKTYLNNGEIDESNKNNCTEDEQISKSSHDFELNGNCRESSGSDITLSSSESSSGLDTPREHRARNNNHLQPVSLSSVPHKPVTFLSTTTDKENQRSQSVWSLGSDHGVSIDESSDDMPLKERSGPVTRSEKVADIEIEKLKTELVGFSRQAEVSELELQTLRKQIVKESKRGQDLSKEIVILKEERDSLRLECEKLRAKSKNNIELGDKKMEALLEEMKEELHHEKELNVNLRLQLQKTQESNNELILAMRNLEEMLGQKNGERVHLYDRSRFSENAEEFYNSISKCESEDDEEQKALEKLVKQHSNANETYLLEQKVIDLYSEVEFYKREKDELEMHMEQLALDYEILKQENHGMSYKLEQCELQEKLDMKEECTPSATIVELETQVEHLDGELKQRSKDFSDSLSTIKELEAHIRALEEELEQQAEKFVADLEGMTRAKIEQEQRAILAEEDLRKTRWRNANTADRLQEELKRLSMQIASTFDANEKVAAKAVAESIELQLQKIQLDEKLASTNKELQSVKKEYEAKLYELSNVVDLQTSQIEQMFLELHTKSKLLDQQEIQKEVCESLSREILLLKYEIERLTTENRSLKETESLIQNKIMERNELVTTIALIMKEGEKFQNELNRIRYRKNEYEISMGCLQTELEVLRDHCSDLKHSLVEGEIEKDKLRHQVYQLNDDLKKMKEFNGVDMLWYSEEHTSACDGIETFMESKKSTPSESSPKEVAVLKEKIELLEKQISLREDAIETLASRISEKAMDFQHTIEELECKLGQVVPTSTFQEVNGCKSNIKITSDIPKDTVVNQSQNTNCSSSTEYGNVVSVGRNDRISEDEELKACKLDNSNNNCDKFSTELALLRERNKLMESELKEMQERYSEISLKFAEVEGERQQLVMTLRSLKNYKKI 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37143132 37148517 - Maker00029213 Lcy12g1671 649734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1671 1070 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 143 IPR019448 -
Lcy12g1671 1070 Coils Coil 732 766 - -
Lcy12g1671 1070 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Lcy12g1671 1070 MobiDBLite consensus disorder prediction 192 218 - -
Lcy12g1671 1070 Coils Coil 891 911 - -
Lcy12g1671 1070 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1069 - -
Lcy12g1671 1070 MobiDBLite consensus disorder prediction 177 191 - -
Lcy12g1671 1070 Coils Coil 669 700 - -
Lcy12g1671 1070 Coils Coil 315 363 - -
Lcy12g1671 1070 MobiDBLite consensus disorder prediction 249 272 - -
Lcy12g1671 1070 MobiDBLite consensus disorder prediction 273 291 - -
Lcy12g1671 1070 Coils Coil 630 650 - -
Lcy12g1671 1070 MobiDBLite consensus disorder prediction 169 226 - -
Lcy12g1671 1070 Coils Coil 372 420 - -
Lcy12g1671 1070 Coils Coil 545 604 - -
Lcy12g1671 1070 Coils Coil 489 516 - -
Lcy12g1671 1070 MobiDBLite consensus disorder prediction 249 291 - -
Lcy12g1671 1070 Coils Coil 1005 1053 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1671 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1160 Lcy-Chr10:34153849 Lcy12g1671 Lcy-Chr12:37143132 5.57E-33 dispersed
Lcy12g0016 Lcy-Chr12:475950 Lcy12g1671 Lcy-Chr12:37143132 1.07E-108 dispersed
Lcy12g1671 Lcy-Chr12:37143132 Lcy6g0860 Lcy-Chr6:8694205 9.05E-211 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g663 Blo06g01120 . . . . . . . . . Cma02g01064 . Car02g00807 . . Cpe05g00655 . . . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 . . Cone14ag0089 Cone15ag0095 . Csa05g00299 Chy09g01206 . . . . Bda15g00731 . Bpe12g00427 . . . Cmo02g01081 Cmo15g01279 . . . . . Cpe13g00164 Bhi12g00227 . . Lac11g2114 Hepe06g1563 . Lcy12g1671 . . . . . . . . . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001416 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 5 4 1 72