Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1673 ATGACAGAGGTTTCAGGTCCTGCTGAGAAAGTTGATGCTTCAAAGGACAGAGATATTGCGTTGGCTCGAGTCGAATGGGAGAAGAAGTTGGCATTGATCAAAGCATGGGAGGAGAGTGAGAAGATCAAAGCAGAAAACAAAGCATACAAAAGGCTCTCTGCTATTGACTCTTGGGAGAATAGCAGAAAAGCTTCCATAGAAGCACAGCTGATGAAGCTAGAGGAAAAAATGGAGAAGAAGAAAGCAGAGTACGCCGAGCAGATGAAGAACAAAATTGTTGGAATTCACAAGCAAGGAGAAGAGAAGAAAGCAACCATCGAGGCAGAGCGAAGAGAACAGTGCCTCAAGGTCGAGGAAACCGCAACAAAATATCGAGCTTCGGGGTTCACCCCGAAGACTCTACTCAAATGCTTCAGTGGTTGA 423 45.39 MTEVSGPAEKVDASKDRDIALARVEWEKKLALIKAWEESEKIKAENKAYKRLSAIDSWENSRKASIEAQLMKLEEKMEKKKAEYAEQMKNKIVGIHKQGEEKKATIEAERREQCLKVEETATKYRASGFTPKTLLKCFSG 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37195172 37196121 + Maker00029250 Lcy12g1673 649736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1673 140 PANTHER OS02G0117200 PROTEIN 12 138 - -
Lcy12g1673 140 Pfam Remorin, C-terminal region 28 132 IPR005516 -
Lcy12g1673 140 Coils Coil 63 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1673 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1673 Lcy-Chr12:37195172 Lcy12g0013 Lcy-Chr12:441774 3.59E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g661 Blo06g01117 . Bda05g00072 . Bpe03g00289 . . Bma14g02086 . Cmo18g01268 Cma02g01062 . Car02g00805 . . Cpe05g00657 . Bhi01g01322 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Cone1ag1155 Cone5ag0865 Cone14ag0091 Cone15ag0097 Lsi05g01228 Csa05g00303 Chy09g01204 Cme06g00994 Blo07g00413 Blo09g00109 . . . Bpe12g00425 Bma08g00336 . . Cmo02g01079 . . Cma18g01245 . Car18g01151 Cpe09g00093 . Bhi12g00225 . . Lac11g2116 Hepe06g1565 . Lcy12g1673 Cla05g00878 Cam05g0966 Cec05g0970 Cco05g0970 Clacu05g0954 Cmu05g0910 Cre05g0994 . . Chy06g00944 Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107