Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1700 ATGTCTGACTCTGCTGCTTCTTCTTCTTCTGTACTTTCCGACCAACCAAACAGTCCGACAAGTACTGATTCACTCAAAGCTCCTCTGATCTCCGAAACTCCAACAACTCCAACAACAACAGACAAATTTCCATTTCTCAGTCTTGTCCTCACAGAGTCCAAATCCATAGCCGAAATCGCATTTCCGATGACACTTGTCGGCTTTTTGATGTACTCTCGTTCCATGATTTCCATGTTGTTCCTCGGCCGGTTGGGCGGTTTGTCCTTGGCCGGTGGTTCGCTTGCAATTGGGTTTGCTAATATCACTGGCTACTCTGTTCTCTCTGGTTTGGCCATTGGTATGGAGCCCATTTGCGGCCAAGCTTTTGGGGCTAAAAGATTCAAGCTTTTGGGCCTTGCCCTTCAAAGAACAGTCATTCTTCTTCTCCTTGCTTCGATACCCATTTCGTTTTTTTGGTTCAATATGAAGAAAATCCTTCTCTTTTGCGGCCAAAACGATGATATTGCCAATGAAGCTCATTCCTTCATCCTCTGTTCTCTCCCCGATTTAATTGCTCTCTCTTTTCTTCACCCTTTGCGAATTTACCTTCGTAGTCAATCCATTAACCTCCCTCTCACTTACTGCGCTGGATTGGCCGTTCTTTTCCACATCCCCATTAATTACCTTCTCGTCTCTGTTCTCGAAATGGGAATTTACGGCGTCGCTTTGGGAGCTGTGTGGACGAATTTCAACCTCGTCGGATCGCTGATTGTTTTCATCATCATCTCCGGCGTGTACGAGAAAACCTGGCCGGGAATCTCGTCGGAGTGTTTGAACGGGTGGAAATCGCTTCTCGGATTGGCGATTCCGAGCTGTGTTTCCGTCTGTTTGGAGTGGTGGTGGTACGAAATCATGATTTTGCTAAGTGGGTTCATGATGAATCCTCAATCAACAGTGGCTTCAATGGGGATTTTGATACAGACGACAGCTTTAATCTACATTTTCCCATCGTCACTAAGCTTCGGAGTATCAACAAGAGTGGGAAACGAACTGGGAGCAAATCGTCCAAACAGAGCCAAATTATCCGCCATTATTGGGCTCTGTTCCGGCTTCTTCCTCGGCCTCTCGGCAATGGTGTTCGCTTTCAGCGTCCGCAGAGTCTGGGCCACAATGTTCACAGAGGACGCACAGATCATCGAGCTGACATCTCTAGTTCTCCCAATAATCGGGCTCTGCGAGCTAGGAAACTGCCCACAGACGACGAGCTGCGGAGTTTTGAGAGGCACGGCGAGGCCAAAACTGGGGGCGAATATAAATTTGGGATGTTTTTACATTGTGGGACTGCCGGTAGCGATATGGCTGAGCTTCTACGGCGGGTGGGACTTCAGAGGGCTGTGGATTGGGCTGCTGGCGGCGCAGGGGTCGTGTGCCATGGCGATGCTGATGACAGTAGCTTGGACCAATTGGGAAGAAGAGGTCGAGAGGGCTAAGGAGTTGACCAGAAGCGGCTCGGAGGAAGAGATTGAAGATGGCGATGGTGTTGAAGAAAACGAGACATTGGAGGATTTAAATTCAATGAATCGAAGTGTTTTGGAAGTGTGA 1581 48.45 MSDSAASSSSVLSDQPNSPTSTDSLKAPLISETPTTPTTTDKFPFLSLVLTESKSIAEIAFPMTLVGFLMYSRSMISMLFLGRLGGLSLAGGSLAIGFANITGYSVLSGLAIGMEPICGQAFGAKRFKLLGLALQRTVILLLLASIPISFFWFNMKKILLFCGQNDDIANEAHSFILCSLPDLIALSFLHPLRIYLRSQSINLPLTYCAGLAVLFHIPINYLLVSVLEMGIYGVALGAVWTNFNLVGSLIVFIIISGVYEKTWPGISSECLNGWKSLLGLAIPSCVSVCLEWWWYEIMILLSGFMMNPQSTVASMGILIQTTALIYIFPSSLSFGVSTRVGNELGANRPNRAKLSAIIGLCSGFFLGLSAMVFAFSVRRVWATMFTEDAQIIELTSLVLPIIGLCELGNCPQTTSCGVLRGTARPKLGANINLGCFYIVGLPVAIWLSFYGGWDFRGLWIGLLAAQGSCAMAMLMTVAWTNWEEEVERAKELTRSGSEEEIEDGDGVEENETLEDLNSMNRSVLEV 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37491609 37493189 - Maker00003029 Lcy12g1700 649763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1700 526 CDD MATE_eukaryotic 52 488 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Lcy12g1700 526 MobiDBLite consensus disorder prediction 490 526 - -
Lcy12g1700 526 MobiDBLite consensus disorder prediction 1 36 - -
Lcy12g1700 526 Pfam MatE 62 222 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lcy12g1700 526 Pfam MatE 283 445 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lcy12g1700 526 PANTHER MULTIDRUG RESISTANCE PROTEIN 48 485 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Lcy12g1700 526 NCBIfam MATE family efflux transporter 69 459 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1700 K03327 - - csv:101219094 796.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1700 Lcy-Chr12:37491609 Lcy13g1451 Lcy-Chr13:33012196 3.40E-205 dispersed
Lcy12g1700 Lcy-Chr12:37491609 Lcy6g0192 Lcy-Chr6:1744495 2.21E-222 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79