Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1703 ATGGCTGACCAAAAGCTTCCAATTAATGACACCCAAATAGACCAATCTCTTCCTCATCAGCCTCTTCCATCAAATTCTAAACCAATTTCCATTGACCCTTTTGTTTCTTCTGTCCCCACATGCCAAAATCCAAACCCAAACCCAAATCCAAAATCCCAAGAGGCTGAGGAACAAATATTGGTCAAGAAACTACTTCCAATTCCACTTCCACTACCACCTCCATCATCATCCATGGCTTCTTCAACAATAACTTCTTCTTCTTCCTCTTCCTCTTCTTCAACCAAGAGGCATTCTTTGTATAGAGGAATCCGGTGCCGGAGCGGCAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACGACGCGCATATGGCTCGGAACGTTTCCGACCGCTGAGATGGCTGCCGCCGCTTATGACGTCGCTGCTCTCGCCCTCCGAGGTGGCGACGCCGTCCTCAACTTCCCCTCCTCCATTGCCTCCTACCCTGTTCCCGCCTCGACTTCCCCGGTCGACATACGCTCTGCCGCCTCCACTGCTGCTGCTGCCACCGCCGCGAATGCGTCGAAAAAGGCCCGAGCTTGTAGTAGTAGTAACATTGAAGATGCGACGACGGTCGGCGGTGGAGGAGATTGTAGTAATACGACGTCGTTGGGGATGGAGGAGTTTGTGGATGAGGAGGAGATTTTTGGGCTGCCAAGTTTGCTGGCGGACATGGCGGAGGGGATGATGGTGTCGCCGCCGAGAATGAACTCGCCGCCGCCGTCCGATGACTCGATGGAAAATTCCGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 819 52.63 MADQKLPINDTQIDQSLPHQPLPSNSKPISIDPFVSSVPTCQNPNPNPNPKSQEAEEQILVKKLLPIPLPLPPPSSSMASSTITSSSSSSSSSTKRHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALRGGDAVLNFPSSIASYPVPASTSPVDIRSAASTAAAATAANASKKARACSSSNIEDATTVGGGGDCSNTTSLGMEEFVDEEEIFGLPSLLADMAEGMMVSPPRMNSPPPSDDSMENSDGTESLWSYF 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37515528 37516346 + Maker00003043 Lcy12g1703 649766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1703 272 MobiDBLite consensus disorder prediction 76 98 - -
Lcy12g1703 272 SMART rav1_2 99 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1703 272 MobiDBLite consensus disorder prediction 244 272 - -
Lcy12g1703 272 Gene3D AP2/ERF domain 99 157 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1703 272 MobiDBLite consensus disorder prediction 71 98 - -
Lcy12g1703 272 SUPERFAMILY DNA-binding domain 98 157 IPR016177 GO:0003677(InterPro)
Lcy12g1703 272 ProSiteProfiles AP2/ERF domain profile. 99 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1703 272 MobiDBLite consensus disorder prediction 1 54 - -
Lcy12g1703 272 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 77 271 IPR045277 GO:0003700(InterPro)
Lcy12g1703 272 MobiDBLite consensus disorder prediction 8 54 - -
Lcy12g1703 272 MobiDBLite consensus disorder prediction 254 272 - -
Lcy12g1703 272 FunFam Ethylene-responsive transcription factor 2 98 156 - -
Lcy12g1703 272 CDD AP2 98 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1703 272 Pfam AP2 domain 99 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1703 Lcy-Chr12:37515528 Lcy6g1927 Lcy-Chr6:40315238 3.82E-57 dispersed
Lcy12g1703 Lcy-Chr12:37515528 Lcy12g1704 Lcy-Chr12:37543431 4.89E-29 tandem
Lcy12g1703 Lcy-Chr12:37515528 Lcy6g0194 Lcy-Chr6:1772564 4.02E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19280 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1703 - - - 0.0