Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1704 ATGGATTGGTTCAGCCAATTTTCTGATCCCATTCCTTATTATGGAAATTCTATTTACACGTCGGAATCGTCGTCGACGTTGTCCGATGCCGAAACACCGCCGCAGGCAGTGGCACACTCCGACGAGGAGATTATATTGGCATCGGACCGACCGAAGCGACGGGCCGGTCGGAGGGTTTTTAAAGAGACAAGACATCCTGTTTACAGAGGGGTGCGACGGAGGAATAATGACAAATGGGTTTGTGAGCTGAGAGAACCAAATAAGAAGACCAGGATTTGGCTCGGAACCTATCCGAATGCGGAGATGGCGGCCCGGGCACACGACGTGGCCGCACTCGCATTGAGAGGGAAGTCGGCTTGTCTCAATTTCGCTGACTCGGCGTGGCGGTTTCCAATTCCGTCTAGTGATGACCCCTCTGTGATCAGAGCAGCAGCGGCGAGAGCGGCCAATGAGTGTAAGGATGAGGACTGCAATGTAGGTGGGGGAGAAGATGATGTCGTTTTGGATCAGCCCATAACAGAGCTTGATCGACAGGATTATGTCGACGATGAGGCTTTGTCGAATATGCCTATGTTGCTTGCCAGCATGGCAGAGGGACTTCTTCTTTCTCCTCCATCTTTTTGTAAGCGGTGGGCTGAGGCTGGTGAGTTTACGGATTTGCCCTTGTTGCCTCTCGAATTAAGCAAGGCCCAAAACCGCCACCTGTTTGGGCACGGTGCCCTTTGGGGAAGGCCAGAAGTAGATGTCTATGTGAACAATTGTTTGGAGTCAATTGGAATCGGTACTATGTGTAGAGATTCGACTCGTTTGATCAAAGGTGTTTTGGCATCTTCTTTTGATGTAGATTTACTGGCTCCAATTGCTGAACTTCGTGCGATTGCTAAGGATATTCTGGGATGTTATAGTCTTTTGGTAGAATTGGATTGTCTACAAGTTGTGAACCTAATTCAAAGGAAGACTGAATCGTGGAGTGAAATGGGTGCTTTAGTGGAAGACATTTGGCTTCAGTTGAGTTTTTTTTCTAGTCATTTGCCACAATTTCCCTATTTCTTTTCTTTTATTTCAAGGAAGTGTAATCTAGTTGTTGATGCCATTGTTAAGAAGCCTAAGCTTGATGGGCTTAGTTGA 1128 47.43 MDWFSQFSDPIPYYGNSIYTSESSSTLSDAETPPQAVAHSDEEIILASDRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPNAEMAARAHDVAALALRGKSACLNFADSAWRFPIPSSDDPSVIRAAAARAANECKDEDCNVGGGEDDVVLDQPITELDRQDYVDDEALSNMPMLLASMAEGLLLSPPSFCKRWAEAGEFTDLPLLPLELSKAQNRHLFGHGALWGRPEVDVYVNNCLESIGIGTMCRDSTRLIKGVLASSFDVDLLAPIAELRAIAKDILGCYSLLVELDCLQVVNLIQRKTESWSEMGALVEDIWLQLSFFSSHLPQFPYFFSFISRKCNLVVDAIVKKPKLDGLS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37543431 37548455 + Maker00003023 Lcy12g1704 649767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1704 375 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1704 375 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1704 375 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1704 375 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1704 375 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1704 375 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1704 375 Pfam Reverse transcriptase-like 259 368 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy12g1704 375 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
Lcy12g1704 375 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 209 IPR045277 GO:0003700(InterPro)
Lcy12g1704 375 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Lcy12g1704 375 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1704 Lcy-Chr12:37543431 Lcy6g0195 Lcy-Chr6:1783972 2.48E-61 dispersed
Lcy12g1703 Lcy-Chr12:37515528 Lcy12g1704 Lcy-Chr12:37543431 4.89E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19281 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1704 - - - 0.0