Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1710 ATGCAGTCTCCTTGTATTAGAGAGGCCTCACAGGCCTGCCTTCGAGGCTGCTGTCGACCCCCGTTTCTCAGTCTTCCTGATTCTTCGCAGTCTGCATTACACAGGTCATCTGCAGTTTCAATTCCTGCATACAATTTTCATGGAGCAACGGAGACGTCTCTTCACCCAAATGCTCGCTTCTCCGATCATGAATCAATTCCTTCTCTAAAGGATGCGTTTACTTACTTCATTAGAGCATACCCTCTGTACACTGACACACAACAGATCGATCGAATCCGAGCTGAGGAATATAATCATCTTGCTCTCTCCAAACATGTCTGTCTCGATTACAATGGCCAGTGTCTCTTTTCCTATGCTCAACAGCAGAGTTTCCCAATGGCTCCAGCTGTTGCTTCTTCTTCTTCTCCATCAGGCTCTCCTCCTCCATTTCTGCATTCCCCGGGATCACCATTCTTTAACATCACCCATAGATCAGTGAAACCAAACCCCCAAGTGGAGAATGGTGGTCAAGAATTGGATTTCGAGTCCAGAATCAGAAGTAGAATCATGAAGTTTATGAACTTATCAGAAGATGATTATGCTATGGTGTTTACAGCCAATCAATCATCAGCCTTCAAACTTCTAGCAGACACTTACCCTTTTCAGCACAACAGAAATTTGGTCACTGTTTATGATCACAAGAGCGAGGCAGTTGAATTGATGGTTGAAAGCTCCAAGAAGAAAGGAGCAAGAATCAACTCAGCTGAGTTCATATGGCCAAATCTAACCATCTCTACGGGAAAATTAAGAAGACTGATCGTCGGTAAACGAAAGAAGAGGAAGTCGAAAAGGGGGCTATTTGTTTTCCCACTTCAATCAAGATTAACAGGAACTCCATATTCATATCAATGGCTGAACATAGCTCGGGAAAATGACTGGGATGTCTGCCTAGATGCATGTGCACTCGGACCAAAAGACATGGAAACTTTAGGCCTCTCTCTCTTCAAGCCTGAGTTTCTAATTTCTTCATTCTACAAAGTTTTTGGCGAAAACCCGTCAGGGTTTGGCTGTTTGTTCATCAAGAAATCCAATGTCTCATTCATGGAGAGCTTAATCACCTCCCCTACAAATATCGGCGTTATAAGCCTTATCTCAACATCACCATCACTCCCATTTCCAGAAGATTCAGAGACTACAGAAATCAGAACTCGACAAATCTCAAATCCCAGCATACAAAATCAAAATCTCGATTCACCAGAGTCGTCAAATTTACCTGAAATCGTAGAAGCCACTGAAATTGAAGAGGAAGAACTCTCAATCACAGGAATCGTCGAATTGGGGACGCCCTTCGAATCGGCTCGATCAACAATCACAGAAATGAGAATAAACTGCAGAGGCTTGGATCACGCAGATTCAGTAGGTCTAAGACTAATAAGCATTAGGGCAAGGTACCTGATCAATTGGCTCACAAATGCATTGACGAATCTTCAGCACCCAAATGCAGAAGAAGGGGTTGGCCAAGCCCTAGTCAGAATCTACGGCCCCAAAATCGAAATCAATCGAGGACCCGCCGTGGCATTCAACGTATTCGATTGGAAAGGGGAGAAGGTGGATCCAGCCCTGGTCCAGAAGCTGGCCGATCGGAGCAACATATCGTTGAGCCATGGTTTGTTGAGGCAAGTAATTTTCTGGGACAAGAATGAGGAGGAAATTGAGATGAGAAAGGAGAGAGTGGGTGAGGAAGGGGAAAGAATGGATAGAACAGAGAAACGACATTGCTGGATCTCTGTGGTGACAGCGGGTGTTGGATTTTTGACGAATTTTGAAGATGTTTACAGGCTTTGGGCGTTTGTTTCCAGGTTTTTGGATGCAGATTTTGTGGAGAAAGAGAGATGGAGATATATGGCTCTTAATCAAAAGACCATTGAGTCGGAAACCGAAGAGCCCAAGAAAATCGGTTCGGACCCTCATGGGTTGGACCGCAAAAGAAGCGGAGGACCAACAAGAGGTAGGCTAACCTACCTCCCTCCTCGGCCTCAACATTTTGCGAGCCCAAGCAGTAATTGGACTTCTCGGAGTTCATCCTTTTGGGCCAGTGGAAGCCTCGGTCGTCGTGCCAGAGCCCGCTATCAGCTGATACAGCCAGCACCACACCGGTGTGCAGTGTTTGCTCCATATTTGCAGGCGTCCCCACCATCTATGGAGCGCCCCCAAGTAAAGGAAAAGGAGAAAGGCGAGTGTCCTGTGATTGAGATCTCTTCAAACTTTGAATCTTTTGAAGGACTGAGAAGGAAAATGAATGAAAGAGATGTATCTCCTTTTGTTGTAATTGAAATCTCCTCGAACCCTGATTCTTATGAAGAATAG 2346 45.14 MQSPCIREASQACLRGCCRPPFLSLPDSSQSALHRSSAVSIPAYNFHGATETSLHPNARFSDHESIPSLKDAFTYFIRAYPLYTDTQQIDRIRAEEYNHLALSKHVCLDYNGQCLFSYAQQQSFPMAPAVASSSSPSGSPPPFLHSPGSPFFNITHRSVKPNPQVENGGQELDFESRIRSRIMKFMNLSEDDYAMVFTANQSSAFKLLADTYPFQHNRNLVTVYDHKSEAVELMVESSKKKGARINSAEFIWPNLTISTGKLRRLIVGKRKKRKSKRGLFVFPLQSRLTGTPYSYQWLNIARENDWDVCLDACALGPKDMETLGLSLFKPEFLISSFYKVFGENPSGFGCLFIKKSNVSFMESLITSPTNIGVISLISTSPSLPFPEDSETTEIRTRQISNPSIQNQNLDSPESSNLPEIVEATEIEEEELSITGIVELGTPFESARSTITEMRINCRGLDHADSVGLRLISIRARYLINWLTNALTNLQHPNAEEGVGQALVRIYGPKIEINRGPAVAFNVFDWKGEKVDPALVQKLADRSNISLSHGLLRQVIFWDKNEEEIEMRKERVGEEGERMDRTEKRHCWISVVTAGVGFLTNFEDVYRLWAFVSRFLDADFVEKERWRYMALNQKTIESETEEPKKIGSDPHGLDRKRSGGPTRGRLTYLPPRPQHFASPSSNWTSRSSSFWASGSLGRRARARYQLIQPAPHRCAVFAPYLQASPPSMERPQVKEKEKGECPVIEISSNFESFEGLRRKMNERDVSPFVVIEISSNPDSYEE 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37626310 37630886 + Maker00003073 Lcy12g1710 649773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1710 781 Gene3D Aspartate Aminotransferase, domain 1 446 623 IPR015422 -
Lcy12g1710 781 MobiDBLite consensus disorder prediction 673 687 - -
Lcy12g1710 781 MobiDBLite consensus disorder prediction 637 687 - -
Lcy12g1710 781 MobiDBLite consensus disorder prediction 637 660 - -
Lcy12g1710 781 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 62 617 - -
Lcy12g1710 781 SUPERFAMILY PLP-dependent transferases 162 370 IPR015424 -
Lcy12g1710 781 Gene3D - 156 399 IPR015421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1710 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1710 Lcy-Chr12:37626310 Lcy9g2150 Lcy-Chr9:46114566 8.64E-76 dispersed
Lcy12g1710 Lcy-Chr12:37626310 Lcy12g1176 Lcy-Chr12:23386324 2.83E-182 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25