Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1713 ATGCAAGAACCTGGGTTGGGAATGATGACGGCTGCTGCTGCTGCTGGTTCTAGTGCTGCCCTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGGGTTGGCCAGCTCAAGGCGGAGATTGCTACGCATCCGCTTTACGAGCAGCTTTTAGCGGCCCATGTTGCTTGTCTTCGTGTTGCTACGCCGATTGATCAGCTTCCGATGATCGACGCTCAGTTGTCTCAATCGCACCACGTTTTGCGCTCTTATGCCTCTCAGCAACATCACCAACATGCCCATTCCTTGTCGCCTCACGAGCGCCAAGAGCTCGACAACTTTCTGGCGCAGTACATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAGCAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCTTGCCGTGAAATAGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACAATGTCGGACGACGACGACGACGCTCCGATGGACTTCTCGCTCGATCAATCCGGTGCCGATGCACACGACATGATGGGGTTTGGGCCGCTGCTTCCAACCGAATCTGAAAGATCATTAATGGAGAGAGTTCGACAGGAATTGAAGATCGAGCTAAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAGATATTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTTTTGAAAAACTGGTGGCAGCAACATTCCAAGTGGCCTTACCCAACTGAAGACGACAAGGCGAAGCTGGTCGAGGAGACGGGGCTGCAGCTGAAACAGATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCCAAGCGCAAGAGATAA 903 50.94 MQEPGLGMMTAAAAAGSSAALSGDVSVSGEGVGQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDDDDAPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37656975 37660855 - Maker00003022 Lcy12g1713 649776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1713 300 SMART KNOX1_2 33 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g1713 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677(InterPro)
Lcy12g1713 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
Lcy12g1713 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677(InterPro)
Lcy12g1713 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 286 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy12g1713 300 FunFam homeobox protein knotted-1-like 3 isoform X1 224 285 - -
Lcy12g1713 300 CDD homeodomain 226 287 IPR001356 GO:0003677(InterPro)
Lcy12g1713 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g1713 300 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g1713 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy12g1713 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy12g1713 300 SMART HOX_1 225 290 IPR001356 GO:0003677(InterPro)
Lcy12g1713 300 Gene3D - 222 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1713 Lcy-Chr12:37656975 Lcy9g1869 Lcy-Chr9:43718880 1.54E-116 dispersed
Lcy12g1713 Lcy-Chr12:37656975 Lcy9g1867 Lcy-Chr9:43706358 3.60E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19282 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1713 - - - 0.0